Jaguar movement behavior: Using trajectories and association rule mining algorithms to unveil behavioral states and social interactions

by Correa, P.L.P, Fontes, S.G, Morato, R.G, Stanzani, S.L
Published 2021

BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data

by Av-Shalom, T.V, Chng, K.R, Kwah, J.S, Li, C., Nagarajan, N., Tan, J.W.G
Published 2021

LightCUD: a program for diagnosing IBD based on human gut microbiome data

by Li, M., Xie, Z., Xu, C., Zhou, M., Zhu, H., Zhu, X.
Published 2021

GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction

by Damiani, C., Filippo, M.D, Pescini, D.
Published 2021

On how to generalize species-specific conceptual schemes to generate a species-independent Conceptual Schema of the Genome

by Casamayor, J.C, García S, A.
Published 2021

Sparse self-attention aggregation networks for neural sequence slice interpolation

by Chen, X., Han, H., Li, G., Liu, J., Wang, Z.
Published 2021

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

by Acencio, M.L, Ackerman, E.E, Aghamiri, S.S, Auffray, C., Augé, F., Babur, O., Bachman, J.A, Ballereau, S., Balling, R., Barillot, E., Bauch, A., Beckmann, J.S, Bocskei, Z., Borlinghaus, H., Börnigen, D., Brauner, B., Calzone, L., Conti, M., Coort, S., Czauderna, T., De Meulder, B., de Waard, A., Demir, E., D'Eustachio, P., Dopazo, J., Dräger, A., Dugourd, A., Ehrhart, F., Eijssen, L., Esteban-Medina, M., Evelo, C.T, Fergusson, L., Fobo, G., Fraser, R., Freeman, T.C, Frishman, G., Funahashi, A., Gawron, P., Gillespie, M.E, Glaab, E., Goble, C., Golebiewski, M., Grouès, V., Gyori, B.M, Hanspers, K., Hasenauer, J., Haw, R., Heirendt, L., Helikar, T., Hermjakob, H., Hiki, Y., Hiroi, N., Hoch, M., Hu, X., Iannuccelli, M., Jassal, B., Kitano, H., Kocakaya, E., Korcsmaros, T., Kumar Gupta, S., Kuperstein, I., Kutmon, M., Licata, L., Luna, A., Maier, D., Marchesi, S., Martens, M., Matthews, L., Mazein, A., Messina, F., Modos, D., Monraz Gómez, L.C, Montagud, A., Montrone, C., Nakonecnij, V., Naldi, A., Naveez, M., Nesterova, A., Niarakis, A., Noël, V., Olbei, M., Orlic-Milacic, M., Orta-Resendiz, A., Ortseifen, V., Ostaszewski, M., Overall, R.W, Owen, S., Oxford, K., Peña-Chilet, M., Phair, R., Pham, N., Pico, A.R, Ponce de Leon, M., Porras, P., Puniya, B.L, Rameil, M., Ravel, J.-M, Renz, A., Rex, D.A.B, Rian, K., Riutta, A., Rothfels, K., Ruepp, A., Sacco, F., Saez-Rodriguez, J., Sander, C., Satagopam, V., Scheel, J., Schmiester, L., Schneider, R., Schreiber, F., Senff Ribeiro, A., Sevilla, C., Shamovsky, V., Shoemaker, J.E, Singh, V., Slenter, D., Smula, E., Soliman, S., Somers, J., Stein, L.D, Stephan, R., Summak, G.Y, Teuton, J., the COVID-19 Disease Map Community, Treveil, A., Turei, D., Valdeolivas, A., Valencia, A., Vanhoefer, J., Varusai, T., Vazquez, M., Vega, C., Wang, M., Wilighagen, E.L, Wolkenhauer, O., Wu, G., Yamada, T.G, Yuryev, A., Zucker, J.
Published 2021

The analysis on the human protein domain targets and host-like interacting motifs for the MERS-CoV and SARS-CoV/CoV-2 infers the molecular mimicry of coronavirus

by Castañeda-Delgado, J.E, Enciso-Moreno, J.A, García-Pérez, C.A, Guo, X., Lara-Ramírez, E.E, Martínez, Y.A, Portales-Pérez, D.P, Rivera, G.
Published 2021

FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution

by Derntl, C., Mach, R.L, Mach-Aigner, A.R, Schaffer, D., Vignolle, G.A, Zehetner, L.
Published 2021

Gene function finding through cross-organism ensemble learning

by Masseroli, M., Moro, G.
Published 2021

Assembly and Exploration of a Single Cell Atlas of the Drosophila Larval Ventral Cord. Identification of Rare Cell Types

by Brody, T., Choudhury, S.D, Nguyen, T.H, Serpe, M., Vicidomini, R.
Published 2021

Functional and taxonomic effects of organic amendments on the restoration of semiarid quarry soils

by Comeau, A.M, Miralles, I., Ortega, R.
Published 2021

Metagenomic sequencing of multiple soil horizons and sites in close vicinity revealed novel secondary metabolite diversity

by Angelov, A., Mantri, S.S, Negri, T., Neidhardt, H., Oelmann, Y., Peter, S., Sales-Ortells, H., Ziemert, N.
Published 2021

Mechanistic modeling of the SARS-CoV-2 disease map

by Çubuk, C., Dopazo, J., Esteban-Medina, M., Falco, M.M, Gunyel, D., Hidalgo, M.R, Loucera, C., Ostaszewski, M., Peña-Chilet, M., Rian, K.
Published 2021

Comparison of 16S and whole genome dog microbiomes using machine learning

by Ahn, T.-H, Lewis, S., Li, Q., Nash, A.
Published 2021

DASSI: differential architecture search for splice identification from DNA sequences

by Amira, P.A, Boughorbel, D.S, Moosa, S.
Published 2021

Genome-guided discovery of natural products through multiplexed low-coverage whole-genome sequencing of soil actinomycetes on Oxford Nanopore flongle

by Bewley, C.A, Liu, H.-B, Ohlemacher, S.I, Rajwani, R., Zhao, G.
Published 2021

Indels in SARS-CoV-2 occur at template-switching hotspots

by Chrisman, B.S, Jung, J.-Y, Maleki, S., Paskov, K., Stockham, N., Sun, M.W, Tabatabaei, K., Varma, M., Wall, D.P, Washington, P.
Published 2021