Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories

by Shan Sun, Roshonda B. Jones, Anthony A. Fodor
Published 2020-04-01

Accurate estimates of microarray target concentration from a simple sequence-independent Langmuir model.

by Raad Z Gharaibeh, Anthony A Fodor, Cynthia J Gibas
Published 2010-12-01

A core human microbiome as viewed through 16S rRNA sequence clusters.

by Susan M Huse, Yuzhen Ye, Yanjiao Zhou, Anthony A Fodor
Published 2012-01-01

A microbial signature following bariatric surgery is robustly consistent across multiple cohorts

by Farnaz Fouladi, Ian M. Carroll, Thomas J. Sharpton, Emily Bulik-Sullivan, Leslie Heinberg, Kristine J. Steffen, Anthony A. Fodor
Published 2021-01-01

Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach (ZINQ)

by Wodan Ling, Ni Zhao, Anna M. Plantinga, Lenore J. Launer, Anthony A. Fodor, Katie A. Meyer, Michael C. Wu
Published 2021-09-01

Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes

by Kathryn Winglee, Annie Green Howard, Wei Sha, Raad Z. Gharaibeh, Jiawu Liu, Donghui Jin, Anthony A. Fodor, Penny Gordon-Larsen
Published 2017-09-01

The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations.

by Anthony A Fodor, Erich R Klem, Deirdre F Gilpin, J Stuart Elborn, Richard C Boucher, Michael M Tunney, Matthew C Wolfgang
Published 2012-01-01

Characterization of the bacterial microbiome among free-ranging bottlenose dolphins (Tursiops truncatus)

by María José Robles-Malagamba, Michael T. Walsh, Mohammad Shamim Ahasan, Patrick Thompson, Randall S. Wells, Christian Jobin, Anthony A. Fodor, Kathryn Winglee, Thomas B. Waltzek
Published 2020-06-01

The Gut-Brain Axis in Healthy Females: Lack of Significant Association between Microbial Composition and Diversity with Psychiatric Measures.

by Susan C Kleiman, Emily C Bulik-Sullivan, Elaine M Glenny, Stephanie C Zerwas, Eun Young Huh, Matthew C B Tsilimigras, Anthony A Fodor, Cynthia M Bulik, Ian M Carroll
Published 2017-01-01

Correction: The Gut-Brain Axis in Healthy Females: Lack of Significant Association between Microbial Composition and Diversity with Psychiatric Measures.

by Susan C Kleiman, Emily C Bulik-Sullivan, Elaine M Glenny, Stephanie C Zerwas, Eun Young Huh, Matthew C B Tsilimigras, Anthony A Fodor, Cynthia M Bulik, Ian M Carroll
Published 2019-01-01

Dietary iron variably modulates assembly of the intestinal microbiota in colitis-resistant and colitis-susceptible mice

by Melissa Ellermann, Raad Z. Gharaibeh, Nitsan Maharshak, Ernesto Peréz-Chanona, Christian Jobin, Ian M. Carroll, Janelle C. Arthur, Scott E Plevy, Anthony A. Fodor, Cory R. Brouwer, R. Balfour Sartor
Published 2020-01-01

Gut microbial communities from patients with anorexia nervosa do not influence body weight in recipient germ-free mice

by Elaine M. Glenny, Farnaz Fouladi, Stephanie A. Thomas, Emily C. Bulik-Sullivan, Quyen Tang, Zorka Djukic, Yesel S. Trillo-Ordonez, Anthony A. Fodor, Lisa M. Tarantino, Cynthia M. Bulik, Ian M. Carroll
Published 2021-01-01

Environmental factors regulate Paneth cell phenotype and host susceptibility to intestinal inflammation in Irgm1-deficient mice

by Allison R. Rogala, Alexi A. Schoenborn, Brian E. Fee, Viviana A. Cantillana, Maria J. Joyce, Raad Z. Gharaibeh, Sayanty Roy, Anthony A. Fodor, R. Balfour Sartor, Gregory A. Taylor, Ajay S. Gulati
Published 2018-02-01

The "most wanted" taxa from the human microbiome for whole genome sequencing.

by Anthony A Fodor, Todd Z DeSantis, Kristine M Wylie, Jonathan H Badger, Yuzhen Ye, Theresa Hepburn, Ping Hu, Erica Sodergren, Konstantinos Liolios, Heather Huot-Creasy, Bruce W Birren, Ashlee M Earl
Published 2012-01-01

Human Colon Mucosal Biofilms and Murine Host Communicate via Altered mRNA and microRNA Expression during Cancer

by Sarah Tomkovich, Raad Z. Gharaibeh, Christine M. Dejea, Jillian L. Pope, Jinmai Jiang, Kathryn Winglee, Josee Gauthier, Rachel C. Newsome, Ye Yang, Anthony A. Fodor, Thomas D. Schmittgen, Cynthia L. Sears, Christian Jobin
Published 2020-01-01

Circulating Short-Chain Fatty Acids Are Positively Associated with Adiposity Measures in Chinese Adults

by Yiqing Wang, Huijun Wang, Annie Green Howard, Katie A. Meyer, Matthew C. B. Tsilimigras, Christy L. Avery, Wei Sha, Shan Sun, Jiguo Zhang, Chang Su, Zhihong Wang, Bing Zhang, Anthony A. Fodor, Penny Gordon-Larsen
Published 2020-07-01

Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing

by Farnaz Fouladi, Maximilian J. Bailey, William B. Patterson, Michael Sioda, Ivory C. Blakley, Anthony A. Fodor, Roshonda B. Jones, Zhanghua Chen, Jeniffer S. Kim, Frederick Lurmann, Cameron Martino, Rob Knight, Frank D. Gilliland, Tanya L. Alderete
Published 2020-05-01

On the robustness of inference of association with the gut microbiota in stool, rectal swab and mucosal tissue samples

by Shan Sun, Xiangzhu Zhu, Xiang Huang, Harvey J. Murff, Reid M. Ness, Douglas L. Seidner, Alicia A. Sorgen, Ivory C. Blakley, Chang Yu, Qi Dai, M. Andrea Azcarate-Peril, Martha J. Shrubsole, Anthony A. Fodor
Published 2021-07-01