DIDA: Distributed Indexing Dispatched Alignment.

by Hamid Mohamadi, Benjamin P Vandervalk, Anthony Raymond, Shaun D Jackman, Justin Chu, Clay P Breshears, Inanc Birol
Published 2015-01-01

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

by Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanc Birol, René L. Warren
Published 2018-06-01

Spaced Seed Data Structures for De Novo Assembly

by Inanç Birol, Justin Chu, Hamid Mohamadi, Shaun D. Jackman, Karthika Raghavan, Benjamin P. Vandervalk, Anthony Raymond, René L. Warren
Published 2015-01-01

Tigmint: correcting assembly errors using linked reads from large molecules

by Shaun D. Jackman, Lauren Coombe, Justin Chu, Rene L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Joerg Bohlmann, Steven J.M. Jones, Inanc Birol
Published 2018-10-01

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.

by Lauren Coombe, René L Warren, Shaun D Jackman, Chen Yang, Benjamin P Vandervalk, Richard A Moore, Stephen Pleasance, Robin J Coope, Joerg Bohlmann, Robert A Holt, Steven J M Jones, Inanc Birol
Published 2016-01-01

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA

by S. Austin Hammond, René L. Warren, Benjamin P. Vandervalk, Erdi Kucuk, Hamza Khan, Ewan A. Gibb, Pawan Pandoh, Heather Kirk, Yongjun Zhao, Martin Jones, Andrew J. Mungall, Robin Coope, Stephen Pleasance, Richard A. Moore, Robert A. Holt, Jessica M. Round, Sara Ohora, Branden V. Walle, Nik Veldhoen, Caren C. Helbing, Inanc Birol
Published 2017-11-01