Plasmodium vivax transcriptional profiling of low input cryopreserved isolates through the intraerythrocytic development cycle.

by Gabriel W Rangel, Martha A Clark, Usheer Kanjee, Jonathan M Goldberg, Bronwyn MacInnis, Maria José Menezes, Marcelo U Ferreira, Manoj T Duraisingh
Published 2020-03-01

Characterization of within-host Plasmodium falciparum diversity using next-generation sequence data.

by Sarah Auburn, Susana Campino, Olivo Miotto, Abdoulaye A Djimde, Issaka Zongo, Magnus Manske, Gareth Maslen, Valentina Mangano, Daniel Alcock, Bronwyn MacInnis, Kirk A Rockett, Taane G Clark, Ogobara K Doumbo, Jean Bosco Ouédraogo, Dominic P Kwiatkowski
Published 2012-01-01

Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients.

by Timothy Robinson, Susana G Campino, Sarah Auburn, Samuel A Assefa, Spencer D Polley, Magnus Manske, Bronwyn MacInnis, Kirk A Rockett, Gareth L Maslen, Mandy Sanders, Michael A Quail, Peter L Chiodini, Dominic P Kwiatkowski, Taane G Clark, Colin J Sutherland
Published 2011-01-01

Characterization of Plasmodium falciparum structure in Nigeria with malaria SNPs barcode

by Bolajoko E. Bankole, Adeyemi T. Kayode, Iguosadolo O. Nosamiefan, Philomena Eromon, Mary L. Baniecki, Rachel F. Daniels, Elizabeth J. Hamilton, Katelyn Durfee, Bronwyn MacInnis, Henrietta Okafor, Akintunde Sowunmi, Sarah K. Volkman, Pardis Sabeti, Dyann Wirth, Christian T. Happi, Onikepe A. Folarin
Published 2018-12-01

An effective method to purify Plasmodium falciparum DNA directly from clinical blood samples for whole genome high-throughput sequencing.

by Sarah Auburn, Susana Campino, Taane G Clark, Abdoulaye A Djimde, Issaka Zongo, Robert Pinches, Magnus Manske, Valentina Mangano, Daniel Alcock, Elisa Anastasi, Gareth Maslen, Bronwyn Macinnis, Kirk Rockett, David Modiano, Christopher I Newbold, Ogobara K Doumbo, Jean Bosco Ouédraogo, Dominic P Kwiatkowski
Published 2011-01-01

Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites.

by Alfred Amambua-Ngwa, Kevin K A Tetteh, Magnus Manske, Natalia Gomez-Escobar, Lindsay B Stewart, M Elizabeth Deerhake, Ian H Cheeseman, Christopher I Newbold, Anthony A Holder, Ellen Knuepfer, Omar Janha, Muminatou Jallow, Susana Campino, Bronwyn Macinnis, Dominic P Kwiatkowski, David J Conway
Published 2012-01-01

Effective preparation of Plasmodium vivax field isolates for high-throughput whole genome sequencing.

by Sarah Auburn, Jutta Marfurt, Gareth Maslen, Susana Campino, Valentin Ruano Rubio, Magnus Manske, Barbara Machunter, Enny Kenangalem, Rintis Noviyanti, Leily Trianty, Boni Sebayang, Grennady Wirjanata, Kanlaya Sriprawat, Daniel Alcock, Bronwyn Macinnis, Olivo Miotto, Taane G Clark, Bruce Russell, Nicholas M Anstey, François Nosten, Dominic P Kwiatkowski, Ric N Price
Published 2013-01-01

Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018

by Amy Gaye, Tolla Ndiaye, Mouhamad Sy, Awa B. Deme, Alphonse B. Thiaw, Aita Sene, Cheikh Ndiaye, Younouss Diedhiou, Amadou M. Mbaye, Ibrahima Ndiaye, Christopher Tomkins-Tinch, Jules F. Gomis, Aida S. Badiane, Bronwyn MacInnis, Daniel J. Park, Mouhamadou Ndiaye, Ngayo Sy, Pardis C. Sabeti, Katherine J. Siddle, Daouda Ndiaye
Published 2021-05-01

Genomic investigation of atypical malaria cases in Kanel, northern Senegal

by Mouhamad Sy, Aida Sadikh Badiane, Awa Bineta Deme, Amy Gaye, Tolla Ndiaye, Fatou Ba Fall, Katherine J. Siddle, Baba Dieye, Yaye Die Ndiaye, Mamadou Alpha Diallo, Khadim Diongue, Mame Cheikh Seck, Ibrahima Mbaye Ndiaye, Moustapha Cissé, Alioune Badara Gueye, Doudou Sène, Yakou Dieye, Tamba Souané, Bronwyn MacInnis, Sarah K. Volkman, Dyann F. Wirth, Daouda Ndiaye
Published 2021-02-01

Genetic evidence for imported malaria and local transmission in Richard Toll, Senegal

by Rachel F. Daniels, Stephen F. Schaffner, Yakou Dieye, Gnagna Dieng, Michael Hainsworth, Fatou B. Fall, Coumba Ndoffene Diouf, Medoune Ndiop, Moustapha Cisse, Alioune Badara Gueye, Oumar Sarr, Philippe Guinot, Awa B. Deme, Amy K. Bei, Mouhamad Sy, Julie Thwing, Bronwyn MacInnis, Duncan Earle, Caterina Guinovart, Doudou Sene, Daniel L. Hartl, Daouda Ndiaye, Richard W. Steketee, Dyann F. Wirth, Sarah K. Volkman
Published 2020-08-01

Population genetic analysis of Plasmodium falciparum parasites using a customized Illumina GoldenGate genotyping assay.

by Susana Campino, Sarah Auburn, Katja Kivinen, Issaka Zongo, Jean-Bosco Ouedraogo, Valentina Mangano, Abdoulaye Djimde, Ogobara K Doumbo, Steven M Kiara, Alexis Nzila, Steffen Borrmann, Kevin Marsh, Pascal Michon, Ivo Mueller, Peter Siba, Hongying Jiang, Xin-Zhuan Su, Chanaki Amaratunga, Duong Socheat, Rick M Fairhurst, Mallika Imwong, Timothy Anderson, François Nosten, Nicholas J White, Rhian Gwilliam, Panos Deloukas, Bronwyn MacInnis, Christopher I Newbold, Kirk Rockett, Taane G Clark, Dominic P Kwiatkowski
Published 2011-01-01

The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response

by Yolanda Botti-Lodovico, Parvathy Nair, Dolo Nosamiefan, Matthew Stremlau, Stephen Schaffner, Sebastian V. Agignoae, John Oke Aiyepada, Fehintola V. Ajogbasile, George O. Akpede, Foday Alhasan, Kristian G. Andersen, Danny A. Asogun, Oladele Oluwafemi Ayodeji, Aida S. Badiane, Kayla Barnes, Matthew R. Bauer, Antoinette Bell-Kareem, Muoebonam Ekene Benard, Ebo Ohomoime Benevolence, Osiemi Blessing, Chloe K. Boehm, Matthew L. Boisen, Nell G. Bond, Luis M. Branco, Michael J. Butts, Amber Carter, Andres Colubri, Awa B. Deme, Katherine C. DeRuff, Younousse Diédhiou, Akhilomen Patience Edamhande, Siham Elhamoumi, Emily J. Engel, Philomena Eromon, Mosoka Fallah, Onikepe A. Folarin, Ben Fry, Robert Garry, Amy Gaye, Michael Gbakie, Sahr M. Gevao, Gabrielle Gionet, Adrianne Gladden-Young, Augustine Goba, Jules Francois Gomis, Anise N. Happi, Mary Houghton, Chikwe Ihekwuazu, Christopher Ojemiega Iruolagbe, Jonathan Jackson, Simbirie Jalloh, Jeremy Johnson, Lansana Kanneh, Adeyemi Kayode, Molly Kemball, Ojide Chiedozie Kingsley, Veronica Koroma, Dylan Kotliar, Samar Mehta, Hayden C. Metsky, Airende Michael, Marzieh Ezzaty Mirhashemi, Kayvon Modjarrad, Mambu Momoh, Cameron A. Myhrvold, Okonofua Grace Naregose, Tolla Ndiaye, Mouhamadou Ndiaye, Aliou Ndiaye, Erica Normandin, Ikponmwosa Odia, Judith Uche Oguzie, Sylvanus A. Okogbenin, Peter O. Okokhere, Johnson Okolie, Idowu B. Olawoye, Testimony J. Olumade, Paul E. Oluniyi, Omigie Omoregie, Daniel J. Park, Mariétou Faye Paye, Brittany Petros, Anthony A. Philippakis, Abechi Priscilla, Alan Ricks, Anne Rimoin, John Demby Sandi, John S. Schieffelin, Monica Schreiber, Mame Cheikh Seck, Sameed Siddiqui, Katherine Siddle, Allison R. Smither, Mouhamad Sy, Ngayo Sy, Christopher H. Tomkins-Tinch, Oyewale Tomori, Chinedu Ugwu, Jessica N. Uwanibe, Eghosasere Anthonia Uyigue, Dada Ireti Victoria, Anika Vinzé, Megan E. Vodzak, Nicole Welch, Haja Isatta Wurie, Daba Zoumarou, Donald S. Grant, Daouda Ndiaye, Bronwyn MacInnis, Pardis C. Sabeti, Christian Happi
Published 2021-08-01