Identification and transfer of spatial transcriptomics signatures for cancer diagnosis

by Niyaz Yoosuf, José Fernández Navarro, Fredrik Salmén, Patrik L. Ståhl, Carsten O. Daub
Published 2020-01-01

MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines.

by Yukari Takahashi, Alistair R R Forrest, Emi Maeno, Takehiro Hashimoto, Carsten O Daub, Jun Yasuda
Published 2009-08-01

Ten simple rules for annotating sequencing experiments.

by Irene Stevens, Abdul Kadir Mukarram, Matthias Hörtenhuber, Terrence F Meehan, Johan Rung, Carsten O Daub
Published 2020-10-01

The short non-coding transcriptome of the protozoan parasite Trypanosoma cruzi.

by Oscar Franzén, Erik Arner, Marcela Ferella, Daniel Nilsson, Patricia Respuela, Piero Carninci, Yoshihide Hayashizaki, Lena Aslund, Björn Andersson, Carsten O Daub
Published 2011-08-01

Characterization of the human RFX transcription factor family by regulatory and target gene analysis

by Debora Sugiaman-Trapman, Morana Vitezic, Eeva-Mari Jouhilahti, Anthony Mathelier, Gilbert Lauter, Sougat Misra, Carsten O. Daub, Juha Kere, Peter Swoboda
Published 2018-03-01

Telomerase Reverse Transcriptase Regulates microRNAs

by Timo Lassmann, Yoshiko Maida, Yasuhiro Tomaru, Mami Yasukawa, Yoshinari Ando, Miki Kojima, Vivi Kasim, Christophe Simon, Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki, Kenkichi Masutomi
Published 2015-01-01

A comprehensive promoter landscape identifies a novel promoter for CD133 in restricted tissues, cancers and stem cells

by Ramakrishna eSompallae, Oliver Marc Hofmann, Oliver Marc Hofmann, Christopher A Maher, Craig eGedye, Andreas eBehren, Morana eVitezic, Morana eVitezic, Carsten O Daub, Carsten O Daub, Sylvie eDevalle, Otavia L Caballero, Piero eCarninci, Yoshihide eHayashizaki, Elizabeth R Lawlor, Jonathan eCebon, Winston eHide, Winston eHide
Published 2013-10-01

Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli

by Annalaura Vacca, Masayoshi Itoh, Hideya Kawaji, Erik Arner, Timo Lassmann, Carsten O. Daub, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Stuart Aitken, Colin A. Semple
Published 2018-08-01

A putative silencer variant in a spontaneous canine model of retinitis pigmentosa.

by Maria Kaukonen, Ileana B Quintero, Abdul Kadir Mukarram, Marjo K Hytönen, Saila Holopainen, Kaisa Wickström, Kaisa Kyöstilä, Meharji Arumilli, Sari Jalomäki, Carsten O Daub, Juha Kere, Hannes Lohi, DoGA Consortium
Published 2020-03-01

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage.

by Daniel Carbajo, Shigeyuki Magi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Erik Arner, Alistair R R Forrest, Piero Carninci, Yoshihide Hayashizaki, Carsten O Daub, FANTOM consortium, Mariko Okada-Hatakeyama, Jessica C Mar
Published 2015-01-01

The Adipose Transcriptional Response to Insulin Is Determined by Obesity, Not Insulin Sensitivity

by Mikael Rydén, Olga Hrydziuszko, Enrichetta Mileti, Amitha Raman, Jette Bornholdt, Mette Boyd, Eva Toft, Veronica Qvist, Erik Näslund, Anders Thorell, Daniel P. Andersson, Ingrid Dahlman, Hui Gao, Albin Sandelin, Carsten O. Daub, Peter Arner
Published 2016-08-01

Correction to: Relatively frequent switching of transcription start sites during cerebellar development

by Peter Zhang, Emmanuel Dimont, Thomas Ha, Douglas J. Swanson, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, the FANTOM Consortium, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Winston Hide, Dan Goldowitz
Published 2018-01-01

Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response.

by Stuart Aitken, Shigeyuki Magi, Ahmad M N Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O Daub, Erik Arner, Piero Carninci, Alistair R R Forrest, Yoshihide Hayashizaki, FANTOM Consortium, Levon M Khachigian, Mariko Okada-Hatakeyama, Colin A Semple
Published 2015-04-01

Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis

by Thomas J. Ha, Peter G. Y. Zhang, Remi Robert, Joanna Yeung, Douglas J. Swanson, Anthony Mathelier, Wyeth W. Wasserman, Sujin Im, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, The FANTOM Consortium, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Daniel Goldowitz
Published 2019-09-01

DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium

by Lothar C. Dieterich, Sarah Klein, Anthony Mathelier, Adriana Sliwa-Primorac, Qiaoli Ma, Young-Kwon Hong, Jay W. Shin, Michito Hamada, Marina Lizio, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, Piero Carninci, Yoshihide Hayashizaki, Alistair R.R. Forrest, Wyeth W. Wasserman, Michael Detmar
Published 2015-11-01