Leveraging Spatial Variation in Tumor Purity for Improved Somatic Variant Calling of Archival Tumor Only Samples

by Rebecca F. Halperin, Winnie S. Liang, Sidharth Kulkarni, Erica E. Tassone, Jonathan Adkins, Daniel Enriquez, Nhan L. Tran, Nicole C. Hank, James Newell, Chinnappa Kodira, Chinnappa Kodira, Ronald Korn, Ronald Korn, Michael E. Berens, Seungchan Kim, Sara A. Byron
Published 2019-03-01

Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides.

by Tara A Gianoulis, Meghan A Griffin, Daniel J Spakowicz, Brian F Dunican, Cambria J Alpha, Andrea Sboner, A Michael Sismour, Chinnappa Kodira, Michael Egholm, George M Church, Mark B Gerstein, Scott A Strobel
Published 2012-01-01

Analysis of high-throughput sequencing and annotation strategies for phage genomes.

by Matthew R Henn, Matthew B Sullivan, Nicole Stange-Thomann, Marcia S Osburne, Aaron M Berlin, Libusha Kelly, Chandri Yandava, Chinnappa Kodira, Qiandong Zeng, Michael Weiand, Todd Sparrow, Sakina Saif, Georgia Giannoukos, Sarah K Young, Chad Nusbaum, Bruce W Birren, Sallie W Chisholm
Published 2010-01-01

Defining the diversity of microbial eukaryotic communities in the mammalian gut within the context of environmental eukaryotic diversity

by Laura Wegener Parfrey, Laura Wegener Parfrey, William Anton Walters, Christian L Lauber, Jose Carlos Clemente, Donna eBerg-Lyons, Julie M Brunelle, tilde eTeiling, Dilip Chinnappa Kodira, Mohammed eMohiuddin, Mohammed eMohiuddin, Mark eDriscoll, Mark eDriscoll, Mark eDriscoll, Noah eFierer, Jack A Gilbert, Rob eKnight, Rob eKnight
Published 2014-06-01

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.

by Joelle Amselem, Christina A Cuomo, Jan A L van Kan, Muriel Viaud, Ernesto P Benito, Arnaud Couloux, Pedro M Coutinho, Ronald P de Vries, Paul S Dyer, Sabine Fillinger, Elisabeth Fournier, Lilian Gout, Matthias Hahn, Linda Kohn, Nicolas Lapalu, Kim M Plummer, Jean-Marc Pradier, Emmanuel Quévillon, Amir Sharon, Adeline Simon, Arjen ten Have, Bettina Tudzynski, Paul Tudzynski, Patrick Wincker, Marion Andrew, Véronique Anthouard, Ross E Beever, Rolland Beffa, Isabelle Benoit, Ourdia Bouzid, Baptiste Brault, Zehua Chen, Mathias Choquer, Jérome Collémare, Pascale Cotton, Etienne G Danchin, Corinne Da Silva, Angélique Gautier, Corinne Giraud, Tatiana Giraud, Celedonio Gonzalez, Sandrine Grossetete, Ulrich Güldener, Bernard Henrissat, Barbara J Howlett, Chinnappa Kodira, Matthias Kretschmer, Anne Lappartient, Michaela Leroch, Caroline Levis, Evan Mauceli, Cécile Neuvéglise, Birgitt Oeser, Matthew Pearson, Julie Poulain, Nathalie Poussereau, Hadi Quesneville, Christine Rascle, Julia Schumacher, Béatrice Ségurens, Adrienne Sexton, Evelyn Silva, Catherine Sirven, Darren M Soanes, Nicholas J Talbot, Matt Templeton, Chandri Yandava, Oded Yarden, Qiandong Zeng, Jeffrey A Rollins, Marc-Henri Lebrun, Marty Dickman
Published 2011-08-01