Ten simple rules to make your publication look better.

by Friederike Ehrhart, Chris T Evelo
Published 2021-05-01

A Review of Pathway-Based Analysis Tools That Visualize Genetic Variants

by Elisa Cirillo, Laurence D. Parnell, Chris T. Evelo
Published 2017-11-01

WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization [v2; ref status: indexed, http://f1000r.es/49l]

by Martina Kutmon, Samad Lotia, Chris T Evelo, Alexander R Pico
Published 2014-09-01

WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization [v1; ref status: indexed, http://f1000r.es/3ij]

by Martina Kutmon, Samad Lotia, Chris T Evelo, Alexander R Pico
Published 2014-07-01

Identification of Biological Pathways Contributing to Marbling in Skeletal Muscle to Improve Beef Cattle Breeding

by Zahra Roudbari, Zahra Roudbari, Susan L. Coort, Martina Kutmon, Martina Kutmon, Lars Eijssen, Jonathan Melius, Tomasz Sadkowski, Chris T. Evelo, Chris T. Evelo
Published 2020-02-01

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

by Ryan A. Miller, Friederike Ehrhart, Friederike Ehrhart, Lars M. T. Eijssen, Lars M. T. Eijssen, Denise N. Slenter, Leopold M. G. Curfs, Chris T. Evelo, Chris T. Evelo, Chris T. Evelo, Egon L. Willighagen, Martina Kutmon, Martina Kutmon
Published 2019-02-01

Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts

by Laurent A. Winckers, Chris T. Evelo, Egon L. Willighagen, Martina Kutmon
Published 2021-08-01

Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets.

by Thomas Kelder, Bruce R Conklin, Chris T Evelo, Alexander R Pico
Published 2010-08-01

CyTargetLinker app update: A flexible solution for network extension in Cytoscape [version 2; peer review: 2 approved]

by Martina Kutmon, Friederike Ehrhart, Egon L. Willighagen, Chris T. Evelo, Susan L. Coort
Published 2019-08-01

Molecular pathways involved in prostate carcinogenesis: insights from public microarray datasets.

by Sarah C Baetke, Michiel E Adriaens, Renaud Seigneuric, Chris T Evelo, Lars M T Eijssen
Published 2012-01-01

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis

by Amnah Siddiqa, Amnah Siddiqa, Elisa Cirillo, Samar H. K. Tareen, Amjad Ali, Martina Kutmon, Martina Kutmon, Lars M. T. Eijssen, Jamil Ahmad, Jamil Ahmad, Chris T. Evelo, Chris T. Evelo, Susan L. Coort
Published 2018-12-01

Introducing WikiPathways as a Data-Source to Support Adverse Outcome Pathways for Regulatory Risk Assessment of Chemicals and Nanomaterials

by Marvin Martens, Tim Verbruggen, Penny Nymark, Penny Nymark, Roland Grafström, Roland Grafström, Lyle D. Burgoon, Hristo Aladjov, Fernando Torres Andón, Fernando Torres Andón, Chris T. Evelo, Chris T. Evelo, Egon L. Willighagen
Published 2018-12-01

EFMviz: A COBRA Toolbox Extension to Visualize Elementary Flux Modes in Genome-Scale Metabolic Models

by Chaitra Sarathy, Martina Kutmon, Michael Lenz, Michiel E. Adriaens, Chris T. Evelo, Ilja C.W. Arts
Published 2020-02-01

Organ-Specific Gene Expression Changes in the Fetal Liver and Placenta in Response to Maternal Folate Depletion

by Jill A. McKay, Long Xie, Michiel Adriaens, Chris T. Evelo, Dianne Ford, John C. Mathers
Published 2016-10-01

A resource to explore the discovery of rare diseases and their causative genes

by Friederike Ehrhart, Egon L. Willighagen, Martina Kutmon, Max van Hoften, Leopold M. G. Curfs, Chris T. Evelo
Published 2021-05-01

Rett syndrome – biological pathways leading from MECP2 to disorder phenotypes

by Friederike Ehrhart, Susan L. M. Coort, Elisa Cirillo, Eric Smeets, Chris T. Evelo, Leopold M. G. Curfs
Published 2016-11-01

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.

by Andra Waagmeester, Martina Kutmon, Anders Riutta, Ryan Miller, Egon L Willighagen, Chris T Evelo, Alexander R Pico
Published 2016-06-01

PathVisio 3: an extendable pathway analysis toolbox.

by Martina Kutmon, Martijn P van Iersel, Anwesha Bohler, Thomas Kelder, Nuno Nunes, Alexander R Pico, Chris T Evelo
Published 2015-02-01

Assessing the Contribution of Relative Macrophage Frequencies to Subcutaneous Adipose Tissue

by Marianthi Kalafati, Michael Lenz, Michael Lenz, Michael Lenz, Gökhan Ertaylan, Gökhan Ertaylan, Ilja C. W. Arts, Ilja C. W. Arts, Chris T. Evelo, Chris T. Evelo, Marleen M. J. van Greevenbroek, Ellen E. Blaak, Michiel Adriaens, Martina Kutmon, Martina Kutmon
Published 2021-05-01

Explicit interaction information from WikiPathways in RDF facilitates drug discovery in the Open PHACTS Discovery Platform [version 2; referees: 2 approved]

by Ryan A. Miller, Peter Woollard, Egon L. Willighagen, Daniela Digles, Martina Kutmon, Antonis Loizou, Andra Waagmeester, Stefan Senger, Chris T. Evelo
Published 2018-10-01