Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function.

by EmilyClare P Baker, Chris Todd Hittinger
Published 2019-04-01

Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina...

by Neža Čadež, Nicolas Bellora, Ricardo Ulloa, Chris Todd Hittinger, Diego Libkind
Published 2019-01-01

An investigation of irreproducibility in maximum likelihood phylogenetic inference

by Xing-Xing Shen, Yuanning Li, Chris Todd Hittinger, Xue-xin Chen, Antonis Rokas
Published 2020-11-01

In Silico Whole Genome Sequencer and Analyzer (iWGS): a Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies

by Xiaofan Zhou, David Peris, Jacek Kominek, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas
Published 2016-11-01

Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data

by Xing-Xing Shen, Xiaofan Zhou, Jacek Kominek, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas
Published 2016-12-01

Signatures of optimal codon usage in metabolic genes inform budding yeast ecology.

by Abigail Leavitt LaBella, Dana A Opulente, Jacob L Steenwyk, Chris Todd Hittinger, Antonis Rokas
Published 2021-04-01

Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network

by Meihua Christina Kuang, Paul D Hutchins, Jason D Russell, Joshua J Coon, Chris Todd Hittinger
Published 2016-09-01

Variation and selection on codon usage bias across an entire subphylum.

by Abigail L LaBella, Dana A Opulente, Jacob L Steenwyk, Chris Todd Hittinger, Antonis Rokas
Published 2019-07-01

Hanseniaspora smithiae sp. nov., a Novel Apiculate Yeast Species From Patagonian Forests That Lacks the Typical Genomic Domestication Signatures for Fermentative Environments

by Neža Čadež, Nicolas Bellora, Ricardo Ulloa, Miha Tome, Hrvoje Petković, Marizeth Groenewald, Chris Todd Hittinger, Diego Libkind
Published 2021-07-01

Microbial Diversity Associated with the Pollen Stores of Captive-Bred Bumble Bee Colonies

by Prarthana S. Dharampal, Luis Diaz-Garcia, Max A. B. Haase, Juan Zalapa, Cameron R. Currie, Chris Todd Hittinger, Shawn A. Steffan
Published 2020-04-01

Factors driving metabolic diversity in the budding yeast subphylum

by Dana A. Opulente, Emily J. Rollinson, Cleome Bernick-Roehr, Amanda Beth Hulfachor, Antonis Rokas, Cletus P. Kurtzman, Chris Todd Hittinger
Published 2018-03-01

Synthetic hybrids of six yeast species

by David Peris, William G. Alexander, Kaitlin J. Fisher, Ryan V. Moriarty, Mira G. Basuino, Emily J. Ubbelohde, Russell L. Wrobel, Chris Todd Hittinger
Published 2020-04-01

Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus.

by David Peris, Quinn K Langdon, Ryan V Moriarty, Kayla Sylvester, Martin Bontrager, Guillaume Charron, Jean-Baptiste Leducq, Christian R Landry, Diego Libkind, Chris Todd Hittinger
Published 2016-07-01

Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples.

by Caoimhe E O'Brien, João Oliveira-Pacheco, Eoin Ó Cinnéide, Max A B Haase, Chris Todd Hittinger, Thomas R Rogers, Oscar Zaragoza, Ursula Bond, Geraldine Butler
Published 2021-03-01

Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids.

by Quinn K Langdon, David Peris, Juan I Eizaguirre, Dana A Opulente, Kelly V Buh, Kayla Sylvester, Martin Jarzyna, María E Rodríguez, Christian A Lopes, Diego Libkind, Chris Todd Hittinger
Published 2020-04-01

CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations

by Hayley R. Stoneman, Russell L. Wrobel, Michael Place, Michael Graham, David J. Krause, Matteo De Chiara, Gianni Liti, Joseph Schacherer, Robert Landick, Audrey P. Gasch, Trey K. Sato, Chris Todd Hittinger
Published 2020-11-01

Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage

by Carla Gonçalves, Jennifer H Wisecaver, Jacek Kominek, Madalena Salema Oom, Maria José Leandro, Xing-Xing Shen, Dana A Opulente, Xiaofan Zhou, David Peris, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas, Paula Gonçalves
Published 2018-04-01

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts

by Tadeusz Krassowski, Aisling Y. Coughlan, Xing-Xing Shen, Xiaofan Zhou, Jacek Kominek, Dana A. Opulente, Robert Riley, Igor V. Grigoriev, Nikunj Maheshwari, Denis C. Shields, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas, Kenneth H. Wolfe
Published 2018-05-01

Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research

by Sean J. McIlwain, David Peris, Maria Sardi, Oleg V. Moskvin, Fujie Zhan, Kevin S. Myers, Nicholas M. Riley, Alyssa Buzzell, Lucas S. Parreiras, Irene M. Ong, Robert Landick, Joshua J. Coon, Audrey P. Gasch, Trey K. Sato, Chris Todd Hittinger
Published 2016-06-01

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts.

by Jacob L Steenwyk, Dana A Opulente, Jacek Kominek, Xing-Xing Shen, Xiaofan Zhou, Abigail L Labella, Noah P Bradley, Brandt F Eichman, Neža Čadež, Diego Libkind, Jeremy DeVirgilio, Amanda Beth Hulfachor, Cletus P Kurtzman, Chris Todd Hittinger, Antonis Rokas
Published 2019-05-01