Computational Studies on the Nonenzymatic Deamidation Mechanisms of Glutamine Residues

by Koichi Kato, Tomoki Nakayoshi, Eiji Kurimoto, Akifumi Oda
Published 2019-02-01

Mechanisms of Deamidation of Asparagine Residues and Effects of Main-Chain Conformation on Activation Energy

by Koichi Kato, Tomoki Nakayoshi, Eiji Kurimoto, Akifumi Oda
Published 2020-09-01

Virtual Alanine Scan of the Main Protease Active Site in Severe Acute Respiratory Syndrome Coronavirus 2

by Tomoki Nakayoshi, Koichi Kato, Eiji Kurimoto, Akifumi Oda
Published 2021-09-01

Computational Studies on Water-Catalyzed Mechanisms for Stereoinversion of Glutarimide Intermediates Formed from Glutamic Acid Residues in Aqueous Phase

by Tomoki Nakayoshi, Shuichi Fukuyoshi, Koichi Kato, Eiji Kurimoto, Akifumi Oda
Published 2019-05-01

Validation of Molecular Dynamics Simulations for Prediction of Three-Dimensional Structures of Small Proteins

by Koichi Kato, Tomoki Nakayoshi, Shuichi Fukuyoshi, Eiji Kurimoto, Akifumi Oda
Published 2017-10-01

Molecular Mechanisms of Succinimide Formation from Aspartic Acid Residues Catalyzed by Two Water Molecules in the Aqueous Phase

by Tomoki Nakayoshi, Koichi Kato, Shuichi Fukuyoshi, Ohgi Takahashi, Eiji Kurimoto, Akifumi Oda
Published 2021-01-01

Molecular and Structural Basis of the Proteasome α Subunit Assembly Mechanism Mediated by the Proteasome-Assembling Chaperone PAC3-PAC4 Heterodimer

by Tadashi Satoh, Maho Yagi-Utsumi, Kenta Okamoto, Eiji Kurimoto, Keiji Tanaka, Koichi Kato
Published 2019-05-01

Deciphering Structural Alterations Associated with Activity Reductions of Genetic Polymorphisms in Cytochrome P450 2A6 Using Molecular Dynamics Simulations

by Koichi Kato, Tomoki Nakayoshi, Rika Nokura, Hiroki Hosono, Masahiro Hiratsuka, Yoshinobu Ishikawa, Eiji Kurimoto, Akifumi Oda
Published 2021-09-01

pH-Dependent Assembly and Segregation of the Coiled-Coil Segments of Yeast Putative Cargo Receptors Emp46p and Emp47p.

by Kentaro Ishii, Hiroki Enda, Masanori Noda, Megumi Kajino, Akemi Kim, Eiji Kurimoto, Ken Sato, Akihiko Nakano, Yuji Kobayashi, Hirokazu Yagi, Susumu Uchiyama, Koichi Kato
Published 2015-01-01

NMR and mutational identification of the collagen-binding site of the chaperone Hsp47.

by Maho Yagi-Utsumi, Sumi Yoshikawa, Yoshiki Yamaguchi, Yohei Nishi, Eiji Kurimoto, Yoshihito Ishida, Takayuki Homma, Jun Hoseki, Yoshimi Nishikawa, Takaki Koide, Kazuhiro Nagata, Koichi Kato
Published 2012-01-01

Mutational and Combinatorial Control of Self-Assembling and Disassembling of Human Proteasome α Subunits

by Taichiro Sekiguchi, Tadashi Satoh, Eiji Kurimoto, Chihong Song, Toshiya Kozai, Hiroki Watanabe, Kentaro Ishii, Hirokazu Yagi, Saeko Yanaka, Susumu Uchiyama, Takayuki Uchihashi, Kazuyoshi Murata, Koichi Kato
Published 2019-05-01