Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders

by Daniel Oreper, Yanwei Cai, Lisa M. Tarantino, Fernando Pardo-Manuel de Villena, William Valdar
Published 2017-06-01

A comparative survey of the frequency and distribution of polymorphism in the genome of Xenopus tropicalis.

by Chris Showell, Samantha Carruthers, Amanda Hall, Fernando Pardo-Manuel de Villena, Derek Stemple, Frank L Conlon
Published 2011-01-01

Toward Personalized Gene Therapy: Characterizing the Host Genetic Control of Lentiviral-Vector-Mediated Hepatic Gene Delivery

by Thipparat Suwanmanee, Martin T. Ferris, Peirong Hu, Tong Gui, Stephanie A. Montgomery, Fernando Pardo-Manuel de Villena, Tal Kafri
Published 2017-06-01

Genetic architecture of atherosclerosis dissected by QTL analyses in three F2 intercrosses of apolipoprotein E-null mice on C57BL6/J, DBA/2J and 129S6/SvEvTac backgrounds.

by Natalia Makhanova, Andrew P Morgan, Yukako Kayashima, Andrei Makhanov, Sylvia Hiller, Svetlana Zhilicheva, Longquan Xu, Fernando Pardo-Manuel de Villena, Nobuyo Maeda
Published 2017-01-01

Intronic parent-of-origin dependent differential methylation at the Actn1 gene is conserved in rodents but is not associated with imprinted expression.

by John D Calaway, José Ignacio Domínguez, Megan E Hanson, Ezequiel C Cambranis, Fernando Pardo-Manuel de Villena, Elena de la Casa-Esperon
Published 2012-01-01

Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers

by Andrew P. Morgan, John P. Didion, Anthony G. Doran, James M. Holt, Leonard McMillan, Thomas M. Keane, Fernando Pardo-Manuel de Villena
Published 2016-12-01

Reciprocal F1 Hybrids of Two Inbred Mouse Strains Reveal Parent-of-Origin and Perinatal Diet Effects on Behavior and Expression

by Daniel Oreper, Sarah A. Schoenrock, Rachel McMullan, Robin Ervin, Joseph Farrington, Darla R. Miller, Fernando Pardo-Manuel de Villena, William Valdar, Lisa M. Tarantino
Published 2018-11-01

Genetic architecture of skewed X inactivation in the laboratory mouse.

by John D Calaway, Alan B Lenarcic, John P Didion, Jeremy R Wang, Jeremy B Searle, Leonard McMillan, William Valdar, Fernando Pardo-Manuel de Villena
Published 2013-01-01

Genetic Background Shapes Phenotypic Response to Diet for Adiposity in the Collaborative Cross

by Phoebe Yam, Phoebe Yam, Jody Albright, Melissa VerHague, Erik R. Gertz, Fernando Pardo-Manuel de Villena, Brian J. Bennett, Brian J. Bennett, Brian J. Bennett
Published 2021-02-01

Dissecting the Genetic Architecture of Cystatin C in Diversity Outbred Mice

by M. Nazmul Huda, Melissa VerHague, Jody Albright, Tangi Smallwood, Timothy A. Bell, Excel Que, Darla R. Miller, Baback Roshanravan, Hooman Allayee, Fernando Pardo Manuel de Villena, Brian J. Bennett
Published 2020-07-01

A Diallel of the Mouse Collaborative Cross Founders Reveals Strong Strain-Specific Maternal Effects on Litter Size

by John R. Shorter, Paul L. Maurizio, Timothy A. Bell, Ginger D. Shaw, Darla R. Miller, Terry J. Gooch, Jason S. Spence, Leonard McMillan, William Valdar, Fernando Pardo-Manuel de Villena
Published 2019-05-01

Identifying protective host gene expression signatures within the spleen during West Nile virus infection in the collaborative cross model

by Richard Green, Courtney Wilkins, Sunil Thomas, Aimee Sekine, Renee C. Ireton, Martin T. Ferris, Duncan M. Hendrick, Kathleen Voss, Fernando Pardo-Manuel de Villena, Ralph Baric, Mark Heise, Michael Gale Jr.
Published 2016-12-01

Transcriptional profiles of WNV neurovirulence in a genetically diverse Collaborative Cross population

by Richard Green, Courtney Wilkins, Sunil Thomas, Aimee Sekine, Renee C. Ireton, Martin T. Ferris, Duncan M. Hendrick, Kathleen Voss, Fernando Pardo-Manuel de Villena, Ralph S. Baric, Mark T. Heise, Michael Gale Jr.
Published 2016-12-01

Functionally Overlapping Variants Control Tuberculosis Susceptibility in Collaborative Cross Mice

by Clare M. Smith, Megan K. Proulx, Rocky Lai, Michael C. Kiritsy, Timothy A. Bell, Pablo Hock, Fernando Pardo-Manuel de Villena, Martin T. Ferris, Richard E. Baker, Samuel M. Behar, Christopher M. Sassetti
Published 2019-11-01

Allelic Variation in the Toll-Like Receptor Adaptor Protein Ticam2 Contributes to SARS-Coronavirus Pathogenesis in Mice

by Lisa E. Gralinski, Vineet D. Menachery, Andrew P. Morgan, Allison L. Totura, Anne Beall, Jacob Kocher, Jessica Plante, D. Corinne Harrison-Shostak, Alexandra Schäfer, Fernando Pardo-Manuel de Villena, Martin T. Ferris, Ralph S. Baric
Published 2017-06-01

High-Resolution Maps of Mouse Reference Populations

by Petr Simecek, Jiri Forejt, Robert W. Williams, Toshihiko Shiroishi, Toyoyuki Takada, Lu Lu, Thomas E. Johnson, Beth Bennett, Christian F. Deschepper, Marie-Pier Scott-Boyer, Fernando Pardo-Manuel de Villena, Gary A. Churchill
Published 2017-10-01

Onchocerca volvulus bivalent subunit vaccine induces protective immunity in genetically diverse collaborative cross recombinant inbred intercross mice

by Nathan M. Ryan, Jessica A. Hess, Fernando Pardo-Manuel de Villena, Benjamin E. Leiby, Ayako Shimada, Lei Yu, Amir Yarmahmoodi, Nikolai Petrovsky, Bin Zhan, Maria Elena Bottazzi, Benjamin L. Makepeace, Sara Lustigman, David Abraham
Published 2021-01-01

Identification of a Locus in Mice that Regulates the Collateral Damage and Lethality of Virus Infection

by Ichiro Misumi, Kevin D. Cook, Joseph E. Mitchell, Makayla M. Lund, Sarah C. Vick, Robert H. Lee, Toru Uchimura, Wolfgang Bergmeier, Piotr Mieczkowski, Fernando Pardo-Manuel de Villena, Jenny P.Y. Ting, Jason K. Whitmire
Published 2019-04-01

Oas1b-dependent Immune Transcriptional Profiles of West Nile Virus Infection in the Collaborative Cross

by Richard Green, Courtney Wilkins, Sunil Thomas, Aimee Sekine, Duncan M. Hendrick, Kathleen Voss, Renee C. Ireton, Michael Mooney, Jennifer T. Go, Gabrielle Choonoo, Sophia Jeng, Fernando Pardo-Manuel de Villena, Martin T. Ferris, Shannon McWeeney, Michael Gale Jr.
Published 2017-06-01

Whole Genome Sequencing and Progress Toward Full Inbreeding of the Mouse Collaborative Cross Population

by John R. Shorter, Maya L. Najarian, Timothy A. Bell, Matthew Blanchard, Martin T. Ferris, Pablo Hock, Anwica Kashfeen, Kathryn E. Kirchoff, Colton L. Linnertz, J. Sebastian Sigmon, Darla R. Miller, Leonard McMillan, Fernando Pardo-Manuel de Villena
Published 2019-05-01