Toolbox for Mobile-Element Insertion Detection on Cancer Genomes

by Wan-Ping Lee, Jiantao Wu, Gabor T. Marth
Published 2015-02-01

Toolbox for Mobile-Element Insertion Detection on Cancer Genomes

by Wan-Ping Lee, Jiantao Wu, Gabor T. Marth
Published 2015-01-01

Toolbox for Mobile-Element Insertion Detection on Cancer Genomes

by Wan-Ping Lee, Jiantao Wu, Gabor T. Marth
Published 2014-01-01

Toolbox for Mobile-Element Insertion Detection on Cancer Genomes

by Wan-Ping Lee, Jiantao Wu, Gabor T. Marth
Published 2014-10-01

SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications.

by Mengyao Zhao, Wan-Ping Lee, Erik P Garrison, Gabor T Marth
Published 2013-01-01

MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping.

by Wan-Ping Lee, Michael P Stromberg, Alistair Ward, Chip Stewart, Erik P Garrison, Gabor T Marth
Published 2014-01-01

OncoGEMINI: software for investigating tumor variants from multiple biopsies with integrated cancer annotations

by Thomas J. Nicholas, Michael J. Cormier, Xiaomeng Huang, Yi Qiao, Gabor T. Marth, Aaron R. Quinlan
Published 2021-03-01

Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing.

by Sabine Hellwig, David A Nix, Keith M Gligorich, John M O'Shea, Alun Thomas, Carrie L Fuertes, Preetida J Bhetariya, Gabor T Marth, Mary P Bronner, Hunter R Underhill
Published 2018-01-01

The stochastic nature of errors in next-generation sequencing of circulating cell-free DNA.

by David A Nix, Sabine Hellwig, Christopher Conley, Alun Thomas, Carrie L Fuertes, Cindy L Hamil, Preetida J Bhetariya, Ignacio Garrido-Laguna, Gabor T Marth, Mary P Bronner, Hunter R Underhill
Published 2020-01-01

A comprehensive map of mobile element insertion polymorphisms in humans.

by Chip Stewart, Deniz Kural, Michael P Strömberg, Jerilyn A Walker, Miriam K Konkel, Adrian M Stütz, Alexander E Urban, Fabian Grubert, Hugo Y K Lam, Wan-Ping Lee, Michele Busby, Amit R Indap, Erik Garrison, Chad Huff, Jinchuan Xing, Michael P Snyder, Lynn B Jorde, Mark A Batzer, Jan O Korbel, Gabor T Marth, 1000 Genomes Project
Published 2011-08-01

Multi-platform discovery of haplotype-resolved structural variation in human genomes

by Mark J. P. Chaisson, Ashley D. Sanders, Xuefang Zhao, Ankit Malhotra, David Porubsky, Tobias Rausch, Eugene J. Gardner, Oscar L. Rodriguez, Li Guo, Ryan L. Collins, Xian Fan, Jia Wen, Robert E. Handsaker, Susan Fairley, Zev N. Kronenberg, Xiangmeng Kong, Fereydoun Hormozdiari, Dillon Lee, Aaron M. Wenger, Alex R. Hastie, Danny Antaki, Thomas Anantharaman, Peter A. Audano, Harrison Brand, Stuart Cantsilieris, Han Cao, Eliza Cerveira, Chong Chen, Xintong Chen, Chen-Shan Chin, Zechen Chong, Nelson T. Chuang, Christine C. Lambert, Deanna M. Church, Laura Clarke, Andrew Farrell, Joey Flores, Timur Galeev, David U. Gorkin, Madhusudan Gujral, Victor Guryev, William Haynes Heaton, Jonas Korlach, Sushant Kumar, Jee Young Kwon, Ernest T. Lam, Jong Eun Lee, Joyce Lee, Wan-Ping Lee, Sau Peng Lee, Shantao Li, Patrick Marks, Karine Viaud-Martinez, Sascha Meiers, Katherine M. Munson, Fabio C. P. Navarro, Bradley J. Nelson, Conor Nodzak, Amina Noor, Sofia Kyriazopoulou-Panagiotopoulou, Andy W. C. Pang, Yunjiang Qiu, Gabriel Rosanio, Mallory Ryan, Adrian Stütz, Diana C. J. Spierings, Alistair Ward, AnneMarie E. Welch, Ming Xiao, Wei Xu, Chengsheng Zhang, Qihui Zhu, Xiangqun Zheng-Bradley, Ernesto Lowy, Sergei Yakneen, Steven McCarroll, Goo Jun, Li Ding, Chong Lek Koh, Bing Ren, Paul Flicek, Ken Chen, Mark B. Gerstein, Pui-Yan Kwok, Peter M. Lansdorp, Gabor T. Marth, Jonathan Sebat, Xinghua Shi, Ali Bashir, Kai Ye, Scott E. Devine, Michael E. Talkowski, Ryan E. Mills, Tobias Marschall, Jan O. Korbel, Evan E. Eichler, Charles Lee
Published 2019-04-01