Editorial: The Past and the Future of Human Immunity Under Viral Evolutionary Pressure

by Tara Patricia Hurst, Gkikas Magiorkinis
Published 2019-10-01

Epigenetic Control of Human Endogenous Retrovirus Expression: Focus on Regulation of Long-Terminal Repeats (LTRs)

by Tara P. Hurst, Gkikas Magiorkinis
Published 2017-05-01

Viral proteins originated de novo by overprinting can be identified by codon usage: application to the "gene nursery" of Deltaretroviruses.

by Angelo Pavesi, Gkikas Magiorkinis, David G Karlin
Published 2013-01-01

Impact of Interferon-α Receptor-1 Promoter Polymorphisms on the Transcriptome of the Hepatitis B Virus-Associated Hepatocellular Carcinoma

by Timokratis Karamitros, Timokratis Karamitros, George Papatheodoridis, Dimitrios Paraskevis, Angelos Hatzakis, Jean L. Mbisa, Urania Georgopoulou, Paul Klenerman, Gkikas Magiorkinis, Gkikas Magiorkinis
Published 2018-04-01

Nanopore sequencing and full genome de novo assembly of human cytomegalovirus TB40/E reveals clonal diversity and structural variations

by Timokratis Karamitros, Bonnie van Wilgenburg, Mark Wills, Paul Klenerman, Gkikas Magiorkinis
Published 2018-08-01

De Novo Assembly of Human Herpes Virus Type 1 (HHV-1) Genome, Mining of Non-Canonical Structures and Detection of Novel Drug-Resistance Mutations Using Short- and Long-Read Next Ge...

by Timokratis Karamitros, Ian Harrison, Renata Piorkowska, Aris Katzourakis, Gkikas Magiorkinis, Jean Lutamyo Mbisa
Published 2016-01-01

Larger mammalian body size leads to lower retroviral activity.

by Aris Katzourakis, Gkikas Magiorkinis, Aaron G Lim, Sunetra Gupta, Robert Belshaw, Robert Gifford
Published 2014-07-01

Identification and characterization of ERV-W-like sequences in Platyrrhini species provides new insights into the evolutionary history of ERV-W in primates

by Nicole Grandi, Maria Paola Pisano, Martina Demurtas, Jonas Blomberg, Gkikas Magiorkinis, Jens Mayer, Enzo Tramontano
Published 2020-02-01

Satellite Earth Observation Data in Epidemiological Modeling of Malaria, Dengue and West Nile Virus: A Scoping Review

by Elisavet Parselia, Charalampos Kontoes, Alexia Tsouni, Christos Hadjichristodoulou, Ioannis Kioutsioukis, Gkikas Magiorkinis, Nikolaos I. Stilianakis
Published 2019-08-01

Integrating phylodynamics and epidemiology to estimate transmission diversity in viral epidemics.

by Gkikas Magiorkinis, Vana Sypsa, Emmanouil Magiorkinis, Dimitrios Paraskevis, Antigoni Katsoulidou, Robert Belshaw, Christophe Fraser, Oliver George Pybus, Angelos Hatzakis
Published 2013-01-01

Interferon-Inducible Protein 16 (IFI16) Has a Broad-Spectrum Binding Ability Against ssDNA Targets: An Evolutionary Hypothesis for Antiretroviral Checkpoint

by Tara Patricia Hurst, Tara Patricia Hurst, Amr Aswad, Timokratis Karamitros, Timokratis Karamitros, Aris Katzourakis, Adrian L. Smith, Gkikas Magiorkinis
Published 2019-07-01

The global spread of hepatitis C virus 1a and 1b: a phylodynamic and phylogeographic analysis.

by Gkikas Magiorkinis, Emmanouil Magiorkinis, Dimitrios Paraskevis, Simon Y W Ho, Beth Shapiro, Oliver G Pybus, Jean-Pierre Allain, Angelos Hatzakis
Published 2009-12-01

SARS-CoV-2 Molecular Transmission Clusters and Containment Measures in Ten European Regions During the First Pandemic Wave

by Maria Bousali, Aristea Dimadi, Evangelia-Georgia Kostaki, Sotirios Tsiodras, Georgios K. Nikolopoulos, Dionyssios N. Sgouras, Gkikas Magiorkinis, George Papatheodoridis, Vasiliki Pogka, Giota Lourida, Aikaterini Argyraki, Emmanouil Angelakis, George Sourvinos, Apostolos Beloukas, Dimitrios Paraskevis, Timokratis Karamitros
Published 2021-03-01

Transcriptional Modulation of Human Endogenous Retroviruses in Primary CD4+ T Cells Following Vorinostat Treatment

by Cory H. White, Nadejda Beliakova-Bethell, Nadejda Beliakova-Bethell, Steven M. Lada, Michael S. Breen, Tara P. Hurst, Celsa A. Spina, Celsa A. Spina, Douglas D. Richman, Douglas D. Richman, Douglas D. Richman, John Frater, Gkikas Magiorkinis, Christopher H. Woelk
Published 2018-04-01

Potential for diagnosis of infectious disease from the 100,000 Genomes Project Metagenomic Dataset: Recommendations for reporting results [version 1; peer review: 2 approved]

by Gkikas Magiorkinis, Philippa C. Matthews, Susan E. Wallace, Katie Jeffery, Kevin Dunbar, Richard Tedder, Jean L. Mbisa, Bernadette Hannigan, Effy Vayena, Peter Simmonds, Daniel S. Brewer, Abraham Gihawi, Ghanasyam Rallapalli, Lea Lahnstein, Tom Fowler, Christine Patch, Fiona Maleady-Crowe, Anneke Lucassen, Colin Cooper
Published 2019-10-01

Comparative Immunogenicity of BNT162b2 mRNA Vaccine with Natural SARS-CoV-2 Infection

by Mina Psichogiou, Andreas Karabinis, Garyphallia Poulakou, Anastasia Antoniadou, Anastasia Kotanidou, Dimitrios Degiannis, Ioanna D. Pavlopoulou, Antigoni Chaidaroglou, Sotirios Roussos, Elpida Mastrogianni, Irene Eliadi, Dimitrios Basoulis, Konstantinos Petsios, Konstantinos Leontis, Eleni Kakalou, Konstantinos Protopapas, Edison Jahaj, Maria Pratikaki, Konstantinos N. Syrigos, Pagona Lagiou, Helen Gogas, Sotirios Tsiodras, Gkikas Magiorkinis, Dimitrios Paraskevis, Vana Sypsa, Angelos Hatzakis
Published 2021-09-01

Molecular Epidemiology of SARS-CoV-2 in Greece Reveals Low Rates of Onward Virus Transmission after Lifting of Travel Restrictions Based on Risk Assessment during Summer 2020

by Evangelia Georgia Kostaki, Georgios A. Pavlopoulos, Kleio-Maria Verrou, Giannis Ampatziadis-Michailidis, Vaggelis Harokopos, Pantelis Hatzis, Panagiotis Moulos, Nikolaos Siafakas, Spyridon Pournaras, Christos Hadjichristodoulou, Fani Chatzopoulou, Dimitrios Chatzidimitriou, Periklis Panagopoulos, Panagiota Lourida, Aikaterini Argyraki, Theodoros Lytras, Spyros Sapounas, Gerasimos Gerolymatos, Georgios Panagiotakopoulos, Panagiotis Prezerakos, Sotirios Tsiodras, Vana Sypsa, Angelos Hatzakis, Cleo Anastassopoulou, Nikolaos Spanakis, Athanasios Tsakris, Meletios Athanasios Dimopoulos, Anastasia Kotanidou, Petros Sfikakis, Georgios Kollias, Gkikas Magiorkinis, Dimitrios Paraskevis
Published 2021-06-01