Insertion sequence elements-mediated structural variations in bacterial genomes

by Etienne Nzabarushimana, Haixu Tang
Published 2018-08-01

STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data

by Haixu Tang, Etienne Nzabarushimana
Published 2017-10-01

Clonal reconstruction from time course genomic sequencing data

by Wazim Mohammed Ismail, Haixu Tang
Published 2019-12-01

A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics.

by Haixu Tang, Sujun Li, Yuzhen Ye
Published 2016-12-01

Probabilistic inference of biochemical reactions in microbial communities from metagenomic sequences.

by Dazhi Jiao, Yuzhen Ye, Haixu Tang
Published 2013-01-01

Whole-genome sequencing and assembly with high-throughput, short-read technologies.

by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou
Published 2007-05-01

Diverse CRISPRs evolving in human microbiomes.

by Mina Rho, Yu-Wei Wu, Haixu Tang, Thomas G Doak, Yuzhen Ye
Published 2012-01-01

GlycanGUI: Automated Glycan Annotation and Quantification Using Glucose Unit Index

by Rui Zhang, Wenjing Peng, Sakshi Gautam, Yifan Huang, Yehia Mechref, Haixu Tang
Published 2021-06-01

The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes

by Brittany A. Niccum, Heewook Lee, Wazim MohammedIsmail, Haixu Tang, Patricia L. Foster
Published 2019-07-01

MOGONET integrates multi-omics data using graph convolutional networks allowing patient classification and biomarker identification

by Tongxin Wang, Wei Shao, Zhi Huang, Haixu Tang, Jie Zhang, Zhengming Ding, Kun Huang
Published 2021-06-01

Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis

by Todd Blevins, Ram Podicheti, Vibhor Mishra, Michelle Marasco, Jing Wang, Doug Rusch, Haixu Tang, Craig S Pikaard
Published 2015-10-01

Testosterone affects neural gene expression differently in male and female juncos: a role for hormones in mediating sexual dimorphism and conflict.

by Mark P Peterson, Kimberly A Rosvall, Jeong-Hyeon Choi, Charles Ziegenfus, Haixu Tang, John K Colbourne, Ellen D Ketterson
Published 2013-01-01

iDASH secure genome analysis competition 2017

by XiaoFeng Wang, Haixu Tang, Shuang Wang, Xiaoqian Jiang, Wenhao Wang, Diyue Bu, Lei Wang, Yicheng Jiang, Chenghong Wang
Published 2018-10-01

Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution

by Karin E. Kram, Christopher Geiger, Wazim Mohammed Ismail, Heewook Lee, Haixu Tang, Patricia L. Foster, Steven E. Finkel, Steven J. Hallam
Published 2017-03-01

Protecting genomic data analytics in the cloud: state of the art and opportunities

by Haixu Tang, Xiaoqian Jiang, Xiaofeng Wang, Shuang Wang, Heidi Sofia, Dov Fox, Kristin Lauter, Bradley Malin, Amalio Telenti, Li Xiong, Lucila Ohno-Machado
Published 2016-10-01

iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching

by Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, XiaoFeng Wang, Tyler Bath, Diyue Bu, Lei Wang, Arif Harmanci, Shaojie Zhang, Degui Zhi, Heidi J. Sofia, Lucila Ohno-Machado
Published 2020-07-01

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

by Malte Herold, Susana Martínez Arbas, Shaman Narayanasamy, Abdul R. Sheik, Luise A. K. Kleine-Borgmann, Laura A. Lebrun, Benoît J. Kunath, Hugo Roume, Irina Bessarab, Rohan B. H. Williams, John D. Gillece, James M. Schupp, Paul S. Keim, Christian Jäger, Michael R. Hoopmann, Robert L. Moritz, Yuzhen Ye, Sujun Li, Haixu Tang, Anna Heintz-Buschart, Patrick May, Emilie E. L. Muller, Cedric C. Laczny, Paul Wilmes
Published 2020-10-01