Local Transmission of SARS-CoV-2 Lineage B.1.1.7, Brazil, December 2020

by Ingra Morales Claro, Flavia Cristina da Silva Sales, Mariana Severo Ramundo, Darlan S. Candido, Camila A.M. Silva, Jaqueline Goes de Jesus, Erika R. Manuli, Cristina Mendes de Oliveira, Luciano Scarpelli, Gustavo Campana, Oliver G. Pybus, Ester Cerdeira Sabino, Nuno Rodrigues Faria, José Eduardo Levi
Published 2021-03-01

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

by Nathan D. Grubaugh, Karthik Gangavarapu, Joshua Quick, Nathaniel L. Matteson, Jaqueline Goes De Jesus, Bradley J. Main, Amanda L. Tan, Lauren M. Paul, Doug E. Brackney, Saran Grewal, Nikos Gurfield, Koen K. A. Van Rompay, Sharon Isern, Scott F. Michael, Lark L. Coffey, Nicholas J. Loman, Kristian G. Andersen
Published 2019-01-01

Lipidomic Analysis Reveals Serum Alteration of Plasmalogens in Patients Infected With ZIKA Virus

by Adriano Queiroz, Isabella Fernanda Dantas Pinto, Maricélia Lima, Marta Giovanetti, Marta Giovanetti, Jaqueline Goes de Jesus, Joilson Xavier, Fernanda Khouri Barreto, Gisele André Baptista Canuto, Helineide Ramos do Amaral, Ana Maria Bispo de Filippis, Denise Lima Mascarenhas, Melissa Barreto Falcão, Normeide Pedreira Santos, Vasco Ariston de Carvalho Azevedo, Marcos Yukio Yoshinaga, Sayuri Miyamoto, Luiz Carlos Junior Alcantara, Luiz Carlos Junior Alcantara, Luiz Carlos Junior Alcantara
Published 2019-04-01

Epidemiologic History and Genetic Diversity Origins of Chikungunya and Dengue Viruses, Paraguay

by Tiago Gräf, Cynthia Vazquez, Marta Giovanetti, Fernanda de Bruycker-Nogueira, Vagner Fonseca, Ingra Morales Claro, Jaqueline Goes de Jesus, Andrea Gómez, Joilson Xavier, Marcos Cesar Lima de Mendonça, Shirley Villalba, Juan Torales, Maria Liz Gamarra, Julien Thézé, Ana Maria Bispo de Filippis, Vasco Azevedo, Tulio de Oliveira, Leticia Franco, Carlos F. Campelo de Albuquerque, Sandra Irala, Edward Charles Holmes, Jairo Andrés Méndez Rico, Luiz Carlos Junior Alcantara
Published 2021-05-01

Circulation of chikungunya virus East/Central/South African lineage in Rio de Janeiro, Brazil.

by Joilson Xavier, Marta Giovanetti, Vagner Fonseca, Julien Thézé, Tiago Gräf, Allison Fabri, Jaqueline Goes de Jesus, Marcos Cesar Lima de Mendonça, Cintia Damasceno Dos Santos Rodrigues, Maria Angélica Mares-Guia, Carolina Cardoso Dos Santos, Stephane Fraga de Oliveira Tosta, Darlan Candido, Rita Maria Ribeiro Nogueira, André Luiz de Abreu, Wanderson Kleber Oliveira, Carlos F Campelo de Albuquerque, Alexandre Chieppe, Tulio de Oliveira, Patrícia Brasil, Guilherme Calvet, Patrícia Carvalho Sequeira, Nuno Rodrigues Faria, Ana Maria Bispo de Filippis, Luiz Carlos Junior Alcantara
Published 2019-01-01

Importation and early local transmission of COVID-19 in Brazil, 2020

by Jaqueline Goes de Jesus, Claudio Sacchi, Darlan da Silva Candido, Ingra Morales Claro, Flávia Cristina Silva Sales, Erika Regina Manuli, Daniela Bernardes Borges da Silva, Terezinha Maria de Paiva, Margarete Aparecida Benega Pinho, Katia Correa de Oliveira Santos, Sarah Catherine Hill, Renato Santana Aguiar, Filipe Romero, Fabiana Cristina Pereira dos Santos, Claudia Regina Gonçalves, Maria do Carmo Timenetsky, Joshua Quick, Julio Henrique Rosa Croda, Wanderson de Oliveira, Andrew Rambaut, Oliver G. Pybus, Nicholas J. Loman, Ester Cerdeira Sabino, Nuno Rodrigues Faria

Genomic detection of a virus lineage replacement event of dengue virus serotype 2 in Brazil, 2019

by Jaqueline Goes de Jesus, Karina Rocha Dutra, Flavia Cristina da Silva Sales, Ingra Morales Claro, Ana Carolina Terzian, Darlan da Silva Candido, Sarah C Hill, Julien Thézé, Celeste Torres, Tatiana Lang D’Agostini, Alvina Clara Felix, Andreia F Negri Reis, Luiz Carlos Junior Alcantara, André L de Abreu, Júlio HR Croda, Wanderson K de Oliveira, Ana Maria Bispo de Filipis, Maria do Carmo Rodrigues dos Santos Camis, Camila Malta Romano, Nick J Loman, Oliver G Pybus, Ester Cerdeira Sabino, Mauricio L Nogueira, Nuno Rodrigues Faria

Persistence of chikungunya ECSA genotype and local outbreak in an upper medium class neighborhood in Northeast Brazil.

by Jaqueline Goes de Jesus, Gabriel da Luz Wallau, Maricelia Lima Maia, Joilson Xavier, Maria Aparecida Oliveira Lima, Vagner Fonseca, Alvaro Salgado de Abreu, Stephane Fraga de Oliveira Tosta, Helineide Ramos do Amaral, Italo Andrade Barbosa Lima, Paloma Viana Silva, Daiana Carlos Dos Santos, Aline Sousa de Oliveira, Siane Campos de Souza, Melissa Barreto Falcão, Erenilde Cerqueira, Laís Ceschini Machado, Mariana Carolina Sobral, Tatiana Maria Teodoro Rezende, Mylena Ribeiro Pereira, Felicidade Mota Pereira, Zuinara Pereira Gusmão Maia, Rafael Freitas de Oliveira França, André Luiz de Abreu, Carlos Frederico Campelo de Albuquerque E Melo, Nuno Rodrigues Faria, Rivaldo Venâncio da Cunha, Marta Giovanetti, Luiz Carlos Junior Alcantara
Published 2020-01-01

Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2.

by Chantal B F Vogels, Mallery I Breban, Isabel M Ott, Tara Alpert, Mary E Petrone, Anne E Watkins, Chaney C Kalinich, Rebecca Earnest, Jessica E Rothman, Jaqueline Goes de Jesus, Ingra Morales Claro, Giulia Magalhães Ferreira, Myuki A E Crispim, Brazil-UK CADDE Genomic Network, Lavanya Singh, Houriiyah Tegally, Ugochukwu J Anyaneji, Network for Genomic Surveillance in South Africa, Emma B Hodcroft, Christopher E Mason, Gaurav Khullar, Jessica Metti, Joel T Dudley, Matthew J MacKay, Megan Nash, Jianhui Wang, Chen Liu, Pei Hui, Steven Murphy, Caleb Neal, Eva Laszlo, Marie L Landry, Anthony Muyombwe, Randy Downing, Jafar Razeq, Tulio de Oliveira, Nuno R Faria, Ester C Sabino, Richard A Neher, Joseph R Fauver, Nathan D Grubaugh
Published 2021-05-01

Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region

by Marta Giovanetti, Nuno Rodrigues Faria, José Lourenço, Jaqueline Goes de Jesus, Joilson Xavier, Ingra Morales Claro, Moritz U.G. Kraemer, Vagner Fonseca, Simon Dellicour, Julien Thézé, Flavia da Silva Salles, Tiago Gräf, Paola Paz Silveira, Valdinete Alves do Nascimento, Victor Costa de Souza, Felipe Campos de Melo Iani, Emerson Augusto Castilho-Martins, Laura Nogueira Cruz, Gabriel Wallau, Allison Fabri, Flávia Levy, Joshua Quick, Vasco de Azevedo, Renato Santana Aguiar, Tulio de Oliveira, Camila Bôtto de Menezes, Marcia da Costa Castilho, Tirza Matos Terra, Marineide Souza da Silva, Ana Maria Bispo de Filippis, André Luiz de Abreu, Wanderson Kleber Oliveira, Julio Croda, Carlos F. Campelo de Albuquerque, Marcio R.T. Nunes, Ester Cerdeira Sabino, Nicholas Loman, Felipe Gomes Naveca, Oliver G. Pybus, Luiz Carlos Alcantara
Published 2020-02-01

Yellow fever transmission in non-human primates, Bahia, Northeastern Brazil.

by Jaqueline Goes de Jesus, Tiago Gräf, Marta Giovanetti, Maria Angélica Mares-Guia, Joilson Xavier, Maricelia Lima Maia, Vagner Fonseca, Allison Fabri, Roberto Fonseca Dos Santos, Felicidade Mota Pereira, Leandro Ferraz Oliveira Santos, Luciana Reboredo de Oliveira da Silva, Zuinara Pereira Gusmão Maia, Jananci Xavier Gomes Cerqueira, Julien Thèze, Leandro Abade, Mirza de Carvalho Santana Cordeiro, Sintia Sacramento Cerqueira Torquato, Eloisa Bahia Santana, Neuza Santos de Jesus Silva, Rosemary Sarmento Oitiçica Dourado, Ademilson Brás Alves, Adeilde do Socorro Guedes, Pedro Macedo da Silva Filho, Nuno Rodrigues Faria, Carlos F Campelo de Albuquerque, André Luiz de Abreu, Alessandro Pecego Martins Romano, Julio Croda, Rodrigo Fabiano do Carmo Said, Gabriel Muricy Cunha, Jeane Magnavita da Fonseca Cerqueira, Arabela Leal E Silva de Mello, Ana Maria Bispo de Filippis, Luiz Carlos Junior Alcantara
Published 2020-08-01

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon.

by Felipe Gomes Naveca, Ingra Claro, Marta Giovanetti, Jaqueline Goes de Jesus, Joilson Xavier, Felipe Campos de Melo Iani, Valdinete Alves do Nascimento, Victor Costa de Souza, Paola Paz Silveira, José Lourenço, Mauricio Santillana, Moritz U G Kraemer, Josh Quick, Sarah C Hill, Julien Thézé, Rodrigo Dias de Oliveira Carvalho, Vasco Azevedo, Flavia Cristina da Silva Salles, Márcio Roberto Teixeira Nunes, Poliana da Silva Lemos, Darlan da Silva Candido, Glauco de Carvalho Pereira, Marluce Aparecida Assunção Oliveira, Cátia Alexandra Ribeiro Meneses, Rodrigo Melo Maito, Claudeth Rocha Santa Brígida Cunha, Daniela Palha de Sousa Campos, Marcia da Costa Castilho, Thalita Caroline da Silva Siqueira, Tiza Matos Terra, Carlos F Campelo de Albuquerque, Laura Nogueira da Cruz, André Luis de Abreu, Divino Valerio Martins, Daniele Silva de Moraes Vanlume Simoes, Renato Santana de Aguiar, Sérgio Luiz Bessa Luz, Nicholas Loman, Oliver G Pybus, Ester C Sabino, Osnei Okumoto, Luiz Carlos Junior Alcantara, Nuno Rodrigues Faria
Published 2019-03-01