Metagenomics and Quantitative Stable Isotope Probing Offer Insights into Metabolism of Polycyclic Aromatic Hydrocarbon Degraders in Chronically Polluted Seawater

by Ella T. Sieradzki, Michael Morando, Jed A. Fuhrman
Published 2021-06-01

Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run

by Yi-Chun Yeh, David M. Needham, Ella T. Sieradzki, Jed A. Fuhrman
Published 2018-04-01

Proteorhodopsins dominate the expression of phototrophic mechanisms in seasonal and dynamic marine picoplankton communities

by Ella T. Sieradzki, Jed A. Fuhrman, Sara Rivero-Calle, Laura Gómez-Consarnau
Published 2018-10-01

Evaluating and Improving Small Subunit rRNA PCR Primer Coverage for Bacteria, Archaea, and Eukaryotes Using Metagenomes from Global Ocean Surveys

by Jesse McNichol, Paul M. Berube, Steven J. Biller, Jed A. Fuhrman
Published 2021-06-01

Accurate genome relative abundance estimation based on shotgun metagenomic reads.

by Li C Xia, Jacob A Cram, Ting Chen, Jed A Fuhrman, Fengzhu Sun
Published 2011-01-01

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

by Jie Ren, Nathan A. Ahlgren, Yang Young Lu, Jed A. Fuhrman, Fengzhu Sun
Published 2017-07-01

Phylogenetic Diversity of Diazotrophs along an Experimental Nutrient Gradient in Mangrove Sediments

by Isabel C. Romero, Myrna E. Jacobson-Meyers, Jed A. Fuhrman, Douglas G. Capone
Published 2015-07-01

Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes

by Ella T. Sieradzki, J. Cesar Ignacio-Espinoza, David M. Needham, Erin B. Fichot, Jed A. Fuhrman
Published 2019-03-01

Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria

by Laura Gómez-Consarnau, Laura Gómez-Consarnau, David M. Needham, Peter K. Weber, Jed A. Fuhrman, Xavier Mayali
Published 2019-06-01

Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP

by Anne E. Dekas, Anne E. Dekas, Alma E. Parada, Alma E. Parada, Xavier Mayali, Jed A. Fuhrman, Jessica Wollard, Peter K. Weber, Jennifer Pett-Ridge
Published 2019-12-01

Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems.

by Lucie Zinger, Linda A Amaral-Zettler, Jed A Fuhrman, M Claire Horner-Devine, Susan M Huse, David B Mark Welch, Jennifer B H Martiny, Mitchell Sogin, Antje Boetius, Alban Ramette
Published 2011-01-01

Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein.

by Thomas Riedel, Laura Gómez-Consarnau, Jürgen Tomasch, Madeleine Martin, Michael Jarek, José M González, Stefan Spring, Meike Rohlfs, Thorsten Brinkhoff, Heribert Cypionka, Markus Göker, Anne Fiebig, Johannes Klein, Alexander Goesmann, Jed A Fuhrman, Irene Wagner-Döbler
Published 2013-01-01

Optimizing de novo genome assembly from PCR-amplified metagenomes

by Simon Roux, Gareth Trubl, Danielle Goudeau, Nandita Nath, Estelle Couradeau, Nathan A. Ahlgren, Yuanchao Zhan, David Marsan, Feng Chen, Jed A. Fuhrman, Trent R. Northen, Matthew B. Sullivan, Virginia I. Rich, Rex R. Malmstrom, Emiley A. Eloe-Fadrosh
Published 2019-05-01