Function and evolution of local repeats in the Firre locus

by Ezgi Hacisuleyman, Chinmay J. Shukla, Catherine L. Weiner, John L. Rinn
Published 2016-03-01

Enhancers in the Peril lincRNA locus regulate distant but not local genes

by Abigail F. Groff, A. Rasim Barutcu, Jordan P. Lewandowski, John L. Rinn
Published 2018-12-01

Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking

by Pornchai Kaewsapsak, David Michael Shechner, William Mallard, John L Rinn, Alice Y Ting
Published 2017-12-01

Anatomic demarcation by positional variation in fibroblast gene expression programs.

by John L Rinn, Chanda Bondre, Hayes B Gladstone, Patrick O Brown, Howard Y Chang
Published 2006-07-01

In vivo Firre and Dxz4 deletion elucidates roles for autosomal gene regulation

by Daniel Andergassen, Zachary D Smith, Jordan P Lewandowski, Chiara Gerhardinger, Alexander Meissner, John L Rinn
Published 2019-11-01

A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus

by A. Rasim Barutcu, Philipp G. Maass, Jordan P. Lewandowski, Catherine L. Weiner, John L. Rinn
Published 2018-04-01

Cis and trans effects differentially contribute to the evolution of promoters and enhancers

by Kaia Mattioli, Winona Oliveros, Chiara Gerhardinger, Daniel Andergassen, Philipp G. Maass, John L. Rinn, Marta Melé
Published 2020-08-01

The Sox2 transcription factor binds RNA

by Zachariah E. Holmes, Desmond J. Hamilton, Taeyoung Hwang, Nicholas V. Parsonnet, John L. Rinn, Deborah S. Wuttke, Robert T. Batey
Published 2020-04-01

Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs.

by Henriette O'Geen, Sharon L Squazzo, Sushma Iyengar, Kim Blahnik, John L Rinn, Howard Y Chang, Roland Green, Peggy J Farnham
Published 2007-06-01

Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer

by Zhou Du, Tong Sun, Ezgi Hacisuleyman, Teng Fei, Xiaodong Wang, Myles Brown, John L. Rinn, Mary Gwo-Shu Lee, Yiwen Chen, Philip W. Kantoff, X. Shirley Liu
Published 2016-03-01

Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention

by Gabrijela Dumbović, Ulrich Braunschweig, Heera K. Langner, Michael Smallegan, Josep Biayna, Evan P. Hass, Katarzyna Jastrzebska, Benjamin Blencowe, Thomas R. Cech, Marvin H. Caruthers, John L. Rinn
Published 2021-06-01

Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome

by He Fang, Giancarlo Bonora, Jordan P. Lewandowski, Jitendra Thakur, Galina N. Filippova, Steven Henikoff, Jay Shendure, Zhijun Duan, John L. Rinn, Xinxian Deng, William S. Noble, Christine M. Disteche
Published 2020-11-01

Resolving mechanisms of immune‐mediated disease in primary CD4 T cells

by Christophe Bourges, Abigail F Groff, Oliver S Burren, Chiara Gerhardinger, Kaia Mattioli, Anna Hutchinson, Theodore Hu, Tanmay Anand, Madeline W Epping, Chris Wallace, Kenneth GC Smith, John L Rinn, James C Lee
Published 2020-05-01

In Vivo Characterization of Linc-p21 Reveals Functional cis-Regulatory DNA Elements

by Abigail F. Groff, Diana B. Sanchez-Gomez, Marcela M.L. Soruco, Chiara Gerhardinger, A. Rasim Barutcu, Eric Li, Lara Elcavage, Olivia Plana, Lluvia V. Sanchez, James C. Lee, Martin Sauvageau, John L. Rinn
Published 2016-08-01

The Firre locus produces a trans-acting RNA molecule that functions in hematopoiesis

by Jordan P. Lewandowski, James C. Lee, Taeyoung Hwang, Hongjae Sunwoo, Jill M. Goldstein, Abigail F. Groff, Nydia P. Chang, William Mallard, Adam Williams, Jorge Henao-Meija, Richard A. Flavell, Jeannie T. Lee, Chiara Gerhardinger, Amy J. Wagers, John L. Rinn
Published 2019-11-01

The reality of pervasive transcription.

by Michael B Clark, Paulo P Amaral, Felix J Schlesinger, Marcel E Dinger, Ryan J Taft, John L Rinn, Chris P Ponting, Peter F Stadler, Kevin V Morris, Antonin Morillon, Joel S Rozowsky, Mark B Gerstein, Claes Wahlestedt, Yoshihide Hayashizaki, Piero Carninci, Thomas R Gingeras, John S Mattick
Published 2011-07-01

Genetic Models Reveal cis and trans Immune-Regulatory Activities for lincRNA-Cox2

by Roland Elling, Elektra K. Robinson, Barbara Shapleigh, Stephen C. Liapis, Sergio Covarrubias, Sol Katzman, Abigail F. Groff, Zhaozhao Jiang, Shiuli Agarwal, Mona Motwani, Jennie Chan, Shruti Sharma, Elizabeth J. Hennessy, Garret A. FitzGerald, Michael T. McManus, John L. Rinn, Katherine A. Fitzgerald, Susan Carpenter
Published 2018-11-01

lncRNA requirements for mouse acute myeloid leukemia and normal differentiation

by M Joaquina Delás, Leah R Sabin, Egor Dolzhenko, Simon RV Knott, Ester Munera Maravilla, Benjamin T Jackson, Sophia A Wild, Tatjana Kovacevic, Eva Maria Stork, Meng Zhou, Nicolas Erard, Emily Lee, David R Kelley, Mareike Roth, Inês AM Barbosa, Johannes Zuber, John L Rinn, Andrew D Smith, Gregory J Hannon
Published 2017-09-01

The Tug1 lncRNA locus is essential for male fertility

by Jordan P. Lewandowski, Gabrijela Dumbović, Audrey R. Watson, Taeyoung Hwang, Emily Jacobs-Palmer, Nydia Chang, Christian Much, Kyle M. Turner, Christopher Kirby, Nimrod D. Rubinstein, Abigail F. Groff, Steve C. Liapis, Chiara Gerhardinger, Assaf Bester, Pier Paolo Pandolfi, John G. Clohessy, Hopi E. Hoekstra, Martin Sauvageau, John L. Rinn
Published 2020-09-01

Genome-wide binding analysis of 195 DNA binding proteins reveals "reservoir" promoters and human specific SVA-repeat family regulation.

by Michael J Smallegan, Soraya Shehata, Savannah F Spradlin, Alison Swearingen, Graycen Wheeler, Arpan Das, Giulia Corbet, Benjamin Nebenfuehr, Daniel Ahrens, Devin Tauber, Shelby Lennon, Kevin Choi, Thao Huynh, Tom Wieser, Kristen Schneider, Michael Bradshaw, Joel Basken, Maria Lai, Timothy Read, Matt Hynes-Grace, Dan Timmons, Jon Demasi, John L Rinn
Published 2021-01-01