Genome-Wide Spectra of Transcription Insertions and Deletions Reveal That Slippage Depends on RNA:DNA Hybrid Complementarity

by Charles C. Traverse, Howard Ochman, Julian Parkhill
Published 2017-08-01

The Proximity of Ribosomal Protein Genes to oriC Enhances Vibrio cholerae Fitness in the Absence of Multifork Replication

by Alfonso Soler-Bistué, Michael Timmermans, Didier Mazel, Julian Parkhill
Published 2017-02-01

Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland

by Danesh Moradigaravand, Veronique Martin, Sharon J. Peacock, Julian Parkhill, Tom Chiller
Published 2017-02-01

Batch effects account for the main findings of an in utero human intestinal bacterial colonization study

by Marcus C. de Goffau, D. Stephen Charnock-Jones, Gordon C. S. Smith, Julian Parkhill
Published 2021-01-01

Whole Genome Sequence Analysis of a Large Isoniazid-Resistant Tuberculosis Outbreak in London: A Retrospective Observational Study.

by Nicola Casali, Agnieszka Broda, Simon R Harris, Julian Parkhill, Timothy Brown, Francis Drobniewski
Published 2016-10-01

A high-resolution view of genome-wide pneumococcal transformation.

by Nicholas J Croucher, Simon R Harris, Lars Barquist, Julian Parkhill, Stephen D Bentley
Published 2012-01-01

Complete Assembly of Escherichia coli Sequence Type 131 Genomes Using Long Reads Demonstrates Antibiotic Resistance Gene Variation within Diverse Plasmid and Chromosomal Contexts

by Arun Gonzales Decano, Catherine Ludden, Theresa Feltwell, Kim Judge, Julian Parkhill, Tim Downing
Published 2019-05-01

The Capsule Regulatory Network of Klebsiella pneumoniae Defined by density-TraDISort

by Matthew J. Dorman, Theresa Feltwell, David A. Goulding, Julian Parkhill, Francesca L. Short
Published 2018-11-01

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study [version 1; referees: 1 approved, 2 approved with reservations]

by John A. Lees, Michelle Kendall, Julian Parkhill, Caroline Colijn, Stephen D. Bentley, Simon R. Harris
Published 2018-03-01

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study [version 2; referees: 2 approved, 1 approved with reservations]

by John A. Lees, Michelle Kendall, Julian Parkhill, Caroline Colijn, Stephen D. Bentley, Simon R. Harris
Published 2018-05-01

Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions

by John A. Lees, T. Tien Mai, Marco Galardini, Nicole E. Wheeler, Samuel T. Horsfield, Julian Parkhill, Jukka Corander
Published 2020-07-01

A Novel Inducible Prophage from <i>Burkholderia Vietnamiensis</i> G4 is Widely Distributed across the Species and Has Lytic Activity against Pathogenic <i>Burkholderia</i>

by Rebecca Weiser, Zhong Ling Yap, Ashley Otter, Brian V. Jones, Jonathan Salvage, Julian Parkhill, Eshwar Mahenthiralingam
Published 2020-05-01

Patent human infections with the whipworm, Trichuris trichiura, are not associated with alterations in the faecal microbiota.

by Philip Cooper, Alan W Walker, Jorge Reyes, Martha Chico, Susannah J Salter, Maritza Vaca, Julian Parkhill
Published 2013-01-01

Phylogenetic relationships of the Wolbachia of nematodes and arthropods.

by Katelyn Fenn, Claire Conlon, Martin Jones, Michael A Quail, Nancy E Holroyd, Julian Parkhill, Mark Blaxter
Published 2006-10-01

Leapfrogging laboratories: the promise and pitfalls of high-tech solutions for antimicrobial resistance surveillance in low-income settings

by Iruka N Okeke, Paul Turner, Direk Limmathurotsakul, Alison Holmes, Julian Parkhill, Nicholas Feasey, Pantelis Georgiou, Sharon J Peacock
Published 2020-12-01

Community outbreaks of group A Streptococcus revealed by genome sequencing

by Claire E. Turner, Luke Bedford, Nicholas M. Brown, Kim Judge, M. Estée Török, Julian Parkhill, Sharon J. Peacock
Published 2017-08-01

Gut microbiota trajectory in early life may predict development of celiac disease

by Marta Olivares, Alan W. Walker, Amalia Capilla, Alfonso Benítez-Páez, Francesc Palau, Julian Parkhill, Gemma Castillejo, Yolanda Sanz
Published 2018-02-01

Genomic Epidemiology of Vibrio cholerae O1 Associated with Floods, Pakistan, 2010

by Muhammad Ali Shah, Ankur Mutreja, Nicholas Thomson, Stephen Baker, Julian Parkhill, Gordon Dougan, Habib Bokhari, Brendan W. Wren
Published 2014-01-01

Investigating the Campylobacter jejuni Transcriptional Response to Host Intestinal Extracts Reveals the Involvement of a Widely Conserved Iron Uptake System

by Martha M. Liu, Christine J. Boinett, Anson C. K. Chan, Julian Parkhill, Michael E. P. Murphy, Erin C. Gaynor
Published 2018-08-01

Genome-wide identification of lineage and locus specific variation associated with pneumococcal carriage duration

by John A Lees, Nicholas J Croucher, David Goldblatt, François Nosten, Julian Parkhill, Claudia Turner, Paul Turner, Stephen D Bentley
Published 2017-07-01