CNCC: an analysis tool to determine genome-wide DNA break end structure at single-nucleotide resolution

by Karol Szlachta, Heather M. Raimer, Laurey D. Comeau, Yuh-Hwa Wang
Published 2020-01-01

Genomic analysis of DNA repair genes and androgen signaling in prostate cancer

by Kasey Jividen, Katarzyna Z Kedzierska, Chun-Song Yang, Karol Szlachta, Aakrosh Ratan, Bryce M Paschal
Published 2018-10-01

Alternative DNA secondary structure formation affects RNA polymerase II promoter-proximal pausing in human

by Karol Szlachta, Ryan G. Thys, Naomi D. Atkin, Levi C. T. Pierce, Stefan Bekiranov, Yuh-Hwa Wang
Published 2018-07-01

Live cell imaging of low- and non-repetitive chromosome loci using CRISPR-Cas9

by Peiwu Qin, Mahmut Parlak, Cem Kuscu, Jigar Bandaria, Mustafa Mir, Karol Szlachta, Ritambhara Singh, Xavier Darzacq, Ahmet Yildiz, Mazhar Adli
Published 2017-03-01

CRISPR knockout screening identifies combinatorial drug targets in pancreatic cancer and models cellular drug response

by Karol Szlachta, Cem Kuscu, Turan Tufan, Sara J. Adair, Stephen Shang, Alex D. Michaels, Matthew G. Mullen, Natasha Lopes Fischer, Jiekun Yang, Limin Liu, Prasad Trivedi, Edward B. Stelow, P. Todd Stukenberg, J. Thomas Parsons, Todd W. Bauer, Mazhar Adli
Published 2018-10-01

SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data

by Eric M. Davis, Yu Sun, Yanling Liu, Pandurang Kolekar, Ying Shao, Karol Szlachta, Heather L. Mulder, Dongren Ren, Stephen V. Rice, Zhaoming Wang, Joy Nakitandwe, Alexander M. Gout, Bridget Shaner, Salina Hall, Leslie L. Robison, Stanley Pounds, Jeffery M. Klco, John Easton, Xiaotu Ma
Published 2021-01-01

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data

by Liqing Tian, Yongjin Li, Michael N. Edmonson, Xin Zhou, Scott Newman, Clay McLeod, Andrew Thrasher, Yu Liu, Bo Tang, Michael C. Rusch, John Easton, Jing Ma, Eric Davis, Austyn Trull, J. Robert Michael, Karol Szlachta, Charles Mullighan, Suzanne J. Baker, James R. Downing, David W. Ellison, Jinghui Zhang
Published 2020-05-01