Improving causality in microbiome research: can human genetic epidemiology help? [version 3; peer review: 2 approved]

by Kaitlin H. Wade, Lindsay J. Hall
Published 2020-04-01

Response: Commentary: Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors

by Raymond Kiu, Raymond Kiu, Lindsay J. Hall
Published 2018-08-01

Perinatal development of innate immune topology

by Philipp Henneke, Katrin Kierdorf, Lindsay J Hall, Markus Sperandio, Mathias Hornef
Published 2021-05-01

A rather dry subject; investigating the study of arid-associated microbial communities

by Peter Osborne, Lindsay J. Hall, Noga Kronfeld-Schor, David Thybert, Wilfried Haerty
Published 2020-12-01

Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors

by Raymond Kiu, Raymond Kiu, Shabhonam Caim, Sarah Alexander, Purnima Pachori, Lindsay J. Hall
Published 2017-12-01

Antibiotic use and the risk of rheumatoid arthritis: a population-based case-control study

by Alyshah Abdul Sultan, Christian Mallen, Sara Muller, Samantha Hider, Ian Scott, Toby Helliwell, Lindsay J. Hall
Published 2019-08-01

Genomic Analysis of <i>Clostridium perfringens</i> BEC/CPILE-Positive, Toxinotype D and E Strains Isolated from Healthy Children

by Raymond Kiu, Kathleen Sim, Alex Shaw, Emma Cornwell, Derek Pickard, J. Simon Kroll, Lindsay J. Hall
Published 2019-09-01

Development and characterization of an enhanced nonviral expression vector for electroporation cancer treatment

by Patrick F Forde, Lindsay J Hall, Mira Sadadcharam, Marcle de Kruijf, Gerald C O'Sullivan, Declan M Soden
Published 2014-01-01

The Pregnancy and EARly Life study (PEARL) - a longitudinal study to understand how gut microbes contribute to maintaining health during pregnancy and early life

by Sarah Phillips, Rachel Watt, Thomas Atkinson, George M Savva, Antonietta Hayhoe, Lindsay J Hall, on behalf of the PEARL study team
Published 2021-08-01

Preterm Infants Harbour a Rapidly Changing Mycobiota That Includes <i>Candida</i> Pathobionts

by Stephen A. James, Sarah Phillips, Andrea Telatin, David Baker, Rebecca Ansorge, Paul Clarke, Lindsay J. Hall, Simon R. Carding
Published 2020-11-01

Bifidobacterium breve UCC2003 Induces a Distinct Global Transcriptomic Program in Neonatal Murine Intestinal Epithelial Cells

by Raymond Kiu, Agatha Treveil, Lukas C. Harnisch, Shabhonam Caim, Charlotte Leclaire, Douwe van Sinderen, Tamas Korcsmaros, Lindsay J. Hall
Published 2020-07-01

Genomic analysis on broiler-associated Clostridium perfringens strains and exploratory caecal microbiome investigation reveals key factors linked to poultry necrotic enteritis

by Raymond Kiu, Joseph Brown, Harley Bedwell, Charlotte Leclaire, Shabhonam Caim, Derek Pickard, Gordon Dougan, Ronald A. Dixon, Lindsay J. Hall
Published 2019-10-01

Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants

by Cristina Alcon-Giner, Shabhonam Caim, Suparna Mitra, Jennifer Ketskemety, Udo Wegmann, John Wain, Gusztav Belteki, Paul Clarke, Lindsay J. Hall
Published 2017-11-01

Succession of Bifidobacterium longum Strains in Response to a Changing Early Life Nutritional Environment Reveals Dietary Substrate Adaptations

by Magdalena Kujawska, Sabina Leanti La Rosa, Laure C. Roger, Phillip B. Pope, Lesley Hoyles, Anne L. McCartney, Lindsay J. Hall
Published 2020-08-01

A Salmonella Typhimurium-Typhi genomic chimera: a model to study Vi polysaccharide capsule function in vivo.

by Angela M Jansen, Lindsay J Hall, Simon Clare, David Goulding, Kathryn E Holt, Andrew J Grant, Piero Mastroeni, Gordon Dougan, Robert A Kingsley
Published 2011-07-01

The impact of storage conditions on human stool 16S rRNA microbiome composition and diversity

by Lauren V. Carruthers, Arinaitwe Moses, Moses Adriko, Christina L. Faust, Edridah M. Tukahebwa, Lindsay J. Hall, Lisa C. Ranford-Cartwright, Poppy H.L. Lamberton
Published 2019-12-01

<i>Bifidobacterium breve</i> UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate

by Deborah Püngel, Agatha Treveil, Matthew J Dalby, Shabhonam Caim, Ian J Colquhoun, Catherine Booth, Jennifer Ketskemety, Tamas Korcsmaros, Douwe van Sinderen, Melissa AE Lawson, Lindsay J Hall
Published 2020-03-01

Streaming histogram sketching for rapid microbiome analytics

by Will PM Rowe, Anna Paola Carrieri, Cristina Alcon-Giner, Shabhonam Caim, Alex Shaw, Kathleen Sim, J. Simon Kroll, Lindsay J. Hall, Edward O. Pyzer-Knapp, Martyn D. Winn
Published 2019-03-01

A mouse model of pathological small intestinal epithelial cell apoptosis and shedding induced by systemic administration of lipopolysaccharide

by Jonathan M. Williams, Carrie A. Duckworth, Alastair J. M. Watson, Mark R. Frey, Jennifer C. Miguel, Michael D. Burkitt, Robert Sutton, Kevin R. Hughes, Lindsay J. Hall, Jorge H. Caamaño, Barry J. Campbell, D. Mark Pritchard
Published 2013-11-01

Microbiota Supplementation with Bifidobacterium and Lactobacillus Modifies the Preterm Infant Gut Microbiota and Metabolome: An Observational Study

by Cristina Alcon-Giner, Matthew J. Dalby, Shabhonam Caim, Jennifer Ketskemety, Alex Shaw, Kathleen Sim, Melissa A.E. Lawson, Raymond Kiu, Charlotte Leclaire, Lisa Chalklen, Magdalena Kujawska, Suparna Mitra, Fahmina Fardus-Reid, Gustav Belteki, Katherine McColl, Jonathan R. Swann, J. Simon Kroll, Paul Clarke, Lindsay J. Hall
Published 2020-08-01