Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.

by Daniel Magee, Marc A Suchard, Matthew Scotch
Published 2017-02-01

Stability-mediated epistasis constrains the evolution of an influenza protein

by Lizhi Ian Gong, Marc A Suchard, Jesse D Bloom
Published 2013-05-01

Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework [version 1; peer review: 1 approved,...

by Guy Baele, Mandev S. Gill, Philippe Lemey, Marc A. Suchard
Published 2020-03-01

Bayesian phylogeography finds its roots.

by Philippe Lemey, Andrew Rambaut, Alexei J Drummond, Marc A Suchard
Published 2009-09-01

Modeling of the temporal patterns of fluoxetine prescriptions and suicide rates in the United States.

by Michael S Milane, Marc A Suchard, Ma-Li Wong, Julio Licinio
Published 2006-06-01

Estimating effective population size changes from preferentially sampled genetic sequences.

by Michael D Karcher, Luiz Max Carvalho, Marc A Suchard, Gytis Dudas, Vladimir N Minin
Published 2020-10-01

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference.

by Michael D Karcher, Julia A Palacios, Trevor Bedford, Marc A Suchard, Vladimir N Minin
Published 2016-03-01

Male-Female Disparities in Years of Potential Life Lost Attributable to COVID-19 in the United States: A State-by-State Analysis

by Jay J. Xu, Jarvis T. Chen, Thomas R. Belin, Ronald S. Brookmeyer, Marc A. Suchard, Christina M. Ramirez
Published 2021-08-01

Racial and Ethnic Disparities in Years of Potential Life Lost Attributable to COVID-19 in the United States: An Analysis of 45 States and the District of Columbia

by Jay J. Xu, Jarvis T. Chen, Thomas R. Belin, Ronald S. Brookmeyer, Marc A. Suchard, Christina M. Ramirez
Published 2021-03-01

Validation of Candidate Serum Ovarian Cancer Biomarkers for Early Detection

by Feng Su, Jennifer Lang, Ashutosh Kumar, Carey Ng, Brian Hsieh, Marc A. Suchard, Srinivasa T. Reddy, Robin Farias-Eisner
Published 2007-01-01

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

by Simon Dellicour, Guy Baele, Gytis Dudas, Nuno R. Faria, Oliver G. Pybus, Marc A. Suchard, Andrew Rambaut, Philippe Lemey
Published 2018-06-01

In Search of Covariates of HIV-1 Subtype B Spread in the United States—A Cautionary Tale of Large-Scale Bayesian Phylogeography

by Samuel L. Hong, Simon Dellicour, Bram Vrancken, Marc A. Suchard, Michael T. Pyne, David R. Hillyard, Philippe Lemey, Guy Baele
Published 2020-02-01

Exceptional Heterogeneity in Viral Evolutionary Dynamics Characterises Chronic Hepatitis C Virus Infection.

by Jayna Raghwani, Rebecca Rose, Isabelle Sheridan, Philippe Lemey, Marc A Suchard, Teresa Santantonio, Patrizia Farci, Paul Klenerman, Oliver G Pybus
Published 2016-09-01

BEAST 2: a software platform for Bayesian evolutionary analysis.

by Remco Bouckaert, Joseph Heled, Denise Kühnert, Tim Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A Suchard, Andrew Rambaut, Alexei J Drummond
Published 2014-04-01

Pseudo-likelihood based logistic regression for estimating COVID-19 infection and case fatality rates by gender, race, and age in California

by Di Xiong, Lu Zhang, Gregory L. Watson, Phillip Sundin, Teresa Bufford, Joseph A. Zoller, John Shamshoian, Marc A. Suchard, Christina M. Ramirez
Published 2020-12-01

A phylogenetic approach for weighting genetic sequences

by Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman
Published 2021-05-01

The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates.

by Bram Vrancken, Andrew Rambaut, Marc A Suchard, Alexei Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey
Published 2014-04-01

Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model.

by Gregory L Watson, Di Xiong, Lu Zhang, Joseph A Zoller, John Shamshoian, Phillip Sundin, Teresa Bufford, Anne W Rimoin, Marc A Suchard, Christina M Ramirez
Published 2021-03-01

Integrating influenza antigenic dynamics with molecular evolution

by Trevor Bedford, Marc A Suchard, Philippe Lemey, Gytis Dudas, Victoria Gregory, Alan J Hay, John W McCauley, Colin A Russell, Derek J Smith, Andrew Rambaut
Published 2014-02-01

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

by Philippe Lemey, Andrew Rambaut, Trevor Bedford, Nuno Faria, Filip Bielejec, Guy Baele, Colin A Russell, Derek J Smith, Oliver G Pybus, Dirk Brockmann, Marc A Suchard
Published 2014-02-01