Joint base-calling of Two DNA Sequences with Factor Graphs

by Shi, Xiaomeng, Lun, Desmond S., Medard, Muriel, Koetter, Ralf, Meldrim, James C., Barry, Andrew James
Published 2011

Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation

by Costello, Maura, Pugh, Trevor J., Fennell, Timothy, Stewart, Chip, Lichtenstein, Lee, Meldrim, James C., Fostel, Jennifer L., Friedrich, Dennis C., Perrin, Danielle, Dionne, Danielle, Kim, Sharon, Gabriel, Stacey B., Fisher, Sheila, Getz, Gad, Lander, Eric Steven
Published 2014

A High-Throughput Chromatin Immunoprecipitation Approach Reveals Principles of Dynamic Gene Regulation in Mammals

by Garber, Manuel, Yosef, Nir, Goren, Alon, Raychowdhury, Raktima, Thielke, Anne, Guttman, Mitchell, Robinson, James, Minie, Brian, Chevrier, Nicolas, Itzhaki, Zohar, Blecher-Gonen, Ronnie, Bornstein, Chamutal, Amann-Zalcenstein, Daniela, Weiner, Assaf, Friedrich, Dennis C., Meldrim, James C., Ram, Oren, Cheng, Christine S., Gnirke, Andreas, Fisher, Sheila, Friedman, Nir, Wong, Bang, Bernstein, Bradley E., Nusbaum, Chad, Hacohen, Nir, Regev, Aviv, Amit, Ido
Published 2014

Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells

by Gifford, Casey A, Ziller, Michael J, Gu, Hongcang, Trapnell, Cole, Donaghey, Julie, Tsankov, Alexander, Shalek, Alex K., Kelley, David R, Shishkin, Alexander A, Issner, Robbyn, Zhang, Xiaolan, Coyne, Michael J., Fostel, Jennifer L., Holmes, Laurie, Meldrim, James C., Guttman, Mitchell, Epstein, Charles B., Park, Hongkun, Kohlbacher, Oliver, Rinn, John L., Gnirke, Andreas, Bernstein, Bradley E., Meissner, Alexander, Lander, Eric Steven
Published 2014