Modeling mutual exclusivity of cancer mutations.

by Ewa Szczurek, Niko Beerenwinkel
Published 2014-03-01

Identification of constrained cancer driver genes based on mutation timing.

by Thomas Sakoparnig, Patrick Fried, Niko Beerenwinkel
Published 2015-01-01

Clonal evolution driven by superdriver mutations

by Patrick Grossmann, Simona Cristea, Niko Beerenwinkel
Published 2020-07-01

The Bourque distances for mutation trees of cancers

by Katharina Jahn, Niko Beerenwinkel, Louxin Zhang
Published 2021-06-01

Computational Cancer Biology: An Evolutionary Perspective.

by Niko Beerenwinkel, Chris D Greenman, Jens Lagergren
Published 2016-02-01

Inferring genetic interactions from comparative fitness data

by Kristina Crona, Alex Gavryushkin, Devin Greene, Niko Beerenwinkel
Published 2017-12-01

Single-cell mutation identification via phylogenetic inference

by Jochen Singer, Jack Kuipers, Katharina Jahn, Niko Beerenwinkel
Published 2018-12-01

Read length versus depth of coverage for viral quasispecies reconstruction.

by Osvaldo Zagordi, Martin Däumer, Christian Beisel, Niko Beerenwinkel
Published 2012-01-01

A mathematical model of the metastatic bottleneck predicts patient outcome and response to cancer treatment.

by Ewa Szczurek, Tyll Krüger, Barbara Klink, Niko Beerenwinkel
Published 2020-10-01

PyBDA: a command line tool for automated analysis of big biological data sets

by Simon Dirmeier, Mario Emmenlauer, Christoph Dehio, Niko Beerenwinkel
Published 2019-11-01

Predicting colorectal cancer risk from adenoma detection via a two-type branching process model.

by Brian M Lang, Jack Kuipers, Benjamin Misselwitz, Niko Beerenwinkel
Published 2020-02-01

Genomic variant annotation workflow for clinical applications [version 2; referees: 2 approved]

by Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, Niko Beerenwinkel
Published 2016-10-01

Predicting cancer type from tumour DNA signatures

by Kee Pang Soh, Ewa Szczurek, Thomas Sakoparnig, Niko Beerenwinkel
Published 2017-11-01

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

by Salem Malikic, Katharina Jahn, Jack Kuipers, S. Cenk Sahinalp, Niko Beerenwinkel
Published 2019-06-01

The temporal order of genetic and pathway alterations in tumorigenesis.

by Moritz Gerstung, Nicholas Eriksson, Jimmy Lin, Bert Vogelstein, Niko Beerenwinkel
Published 2011-01-01

Estimating HIV-1 fitness characteristics from cross-sectional genotype data.

by Sathej Gopalakrishnan, Hesam Montazeri, Stephan Menz, Niko Beerenwinkel, Wilhelm Huisinga
Published 2014-11-01

Learning epistatic gene interactions from perturbation screens.

by Kieran Elmes, Fabian Schmich, Ewa Szczurek, Jeremy Jenkins, Niko Beerenwinkel, Alex Gavryushkin
Published 2021-01-01

Correction: Context-dependent deposition and regulation of mRNAs in P-bodies

by Congwei Wang, Fabian Schmich, Sumana Srivatsa, Julie Weidner, Niko Beerenwinkel, Anne Spang
Published 2018-08-01

Context-dependent deposition and regulation of mRNAs in P-bodies

by Congwei Wang, Fabian Schmich, Sumana Srivatsa, Julie Weidner, Niko Beerenwinkel, Anne Spang
Published 2018-01-01

Viral quasispecies assembly via maximal clique enumeration.

by Armin Töpfer, Tobias Marschall, Rowena A Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel
Published 2014-03-01