Combining multiple functional annotation tools increases coverage of metabolic annotation

by Marc Griesemer, Jeffrey A. Kimbrel, Carol E. Zhou, Ali Navid, Patrik D’haeseleer
Published 2018-12-01

Shotgun Immunoproteomic Approach for the Discovery of Linear B-Cell Epitopes in Biothreat Agents Francisella tularensis and Burkholderia pseudomallei

by Patrik D’haeseleer, Nicole M. Collette, Victoria Lao, Brent W. Segelke, Steven S. Branda, Magdalena Franco
Published 2021-09-01

Discovery of microorganisms and enzymes involved in high-solids decomposition of rice straw using metagenomic analyses.

by Amitha P Reddy, Christopher W Simmons, Patrik D'haeseleer, Jane Khudyakov, Helcio Burd, Masood Hadi, Blake A Simmons, Steven W Singer, Michael P Thelen, Jean S Vandergheynst
Published 2013-01-01

Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community.

by Martin Allgaier, Amitha Reddy, Joshua I Park, Natalia Ivanova, Patrik D'haeseleer, Steve Lowry, Rajat Sapra, Terry C Hazen, Blake A Simmons, Jean S VanderGheynst, Philip Hugenholtz
Published 2010-01-01

Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass.

by Patrik D'haeseleer, John M Gladden, Martin Allgaier, Patrik S G Chain, Susannah G Tringe, Stephanie A Malfatti, Joshua T Aldrich, Carrie D Nicora, Errol W Robinson, Ljiljana Paša-Tolić, Philip Hugenholtz, Blake A Simmons, Steven W Singer
Published 2013-01-01

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

by Patrik D’haeseleer, Jackson Z. Lee, Leslie Prufert-Bebout, Luke C. Burow, Angela M. Detweiler, Peter K. Weber, Ulas Karaoz, Eoin L. Brodie, Tijana Glavina del Rio, Susannah G. Tringe, Brad M. Bebout, Jennifer Pett-Ridge
Published 2017-11-01

A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels.

by Joshua I Park, Eric J Steen, Helcio Burd, Sophia S Evans, Alyssa M Redding-Johnson, Tanveer Batth, Peter I Benke, Patrik D'haeseleer, Ning Sun, Kenneth L Sale, Jay D Keasling, Taek Soon Lee, Christopher J Petzold, Aindrila Mukhopadhyay, Steven W Singer, Blake A Simmons, John M Gladden
Published 2012-01-01