Knowledge driven decomposition of tumor expression profiles

by Wessels Lodewyk FA, van Vliet Martin H, Reinders Marcel JT
Published 2009-01-01

A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets

by van't Veer Laura J, Reinders Marcel JT, Lai Carmen, Wessels Lodewyk FA
Published 2006-05-01

A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability

by Reinders Marcel JT, van den Ham René, Moerland Perry D, Sontrop Herman MJ, Verhaegh Wim FJ
Published 2009-11-01

The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies

by Reinders Marcel JT, Valk Peter JM, Lowenberg Bob, Staal Frank JT, Verhaak Roel GW, de Ridder Dick
Published 2006-03-01

Delineation of amplification, hybridization and location effects in microarray data yields better-quality normalization

by van Someren Eugene P, Mentink Anouk, Hulsman Marc, Dechering Koen J, de Boer Jan, Reinders Marcel JT
Published 2010-03-01

KC-SMARTR: An R package for detection of statistically significant aberrations in multi-experiment aCGH data

by Reinders Marcel JT, Holstege Henne, Velds Arno, Klijn Christiaan, de Ronde Jorma J, Jonkers Jos, Wessels Lodewyk FA
Published 2010-11-01

Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data

by Beijnen Jos H, Gast Marie-Christine W, Engwegen Judith YMN, Meuleman Wouter, Reinders Marcel JT, Wessels Lodewyk FA
Published 2008-02-01

Pooling breast cancer datasets has a synergetic effect on classification performance and improves signature stability

by van de Vijver Marc J, Horlings Hugo M, Reyal Fabien, van Vliet Martin H, Reinders Marcel JT, Wessels Lodewyk FA
Published 2008-08-01

Exploiting combinatorial cultivation conditions to infer transcriptional regulation

by Reinders Marcel JT, Pronk Jack T, Daran-Lapujade Pascale, Daran Jean-Marc, de Winde Johannes H, Knijnenburg Theo A, Wessels Lodewyk FA
Published 2007-01-01

HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data

by Wouters Bas J, de Ridder Jeroen, Beekman Renee, Taskesen Erdogan, Peeters Justine K, Touw Ivo P, Reinders Marcel JT, Delwel Ruud
Published 2010-05-01

SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets

by Nederlof Petra M, van Beers Eric H, van de Vijver Marc J, Horlings Hugo M, Lai Carmen, Wessels Lodewyk FA, Reinders Marcel JT
Published 2007-10-01

Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptom...

by de Winde Johannes H, Daran-Lapujade Pascale AS, van den Broek Marcel A, Daran Jean-Marc G, Knijnenburg Theo A, Pronk Jack T, Reinders Marcel JT, Wessels Lodewyk FA
Published 2009-01-01

<it>De novo </it>sequencing, assembly and analysis of the genome of the laboratory strain <it>Saccharomyces cerevisiae </it>CEN.PK113-7D, a model for modern industrial biotechnolog...

by Nijkamp Jurgen F, van den Broek Marcel, Datema Erwin, de Kok Stefan, Bosman Lizanne, Luttik Marijke A, Daran-Lapujade Pascale, Vongsangnak Wanwipa, Nielsen Jens, Heijne Wilbert HM, Klaassen Paul, Paddon Chris J, Platt Darren, Kötter Peter, van Ham Roeland C, Reinders Marcel JT, Pronk Jack T, de Ridder Dick, Daran Jean-Marc
Published 2012-03-01