Epidemiology and Sequence-Based Evolutionary Analysis of Circulating Non-Polio Enteroviruses

by David M. Brown, Yun Zhang, Richard H. Scheuermann
Published 2020-11-01

Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses.

by Alexandra J Lee, Roshni Bhattacharya, Richard H Scheuermann, Brett E Pickett
Published 2017-01-01

Comprehensive Annotation of Mature Peptides and Genotypes for Zika Virus.

by Guangyu Sun, Christopher N Larsen, Nicole Baumgarth, Edward B Klem, Richard H Scheuermann
Published 2017-01-01

VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements

by Scott Christley, Walter Scarborough, Eddie Salinas, William H. Rounds, Inimary T. Toby, John M. Fonner, Mikhail K. Levin, Min Kim, Stephen A. Mock, Christopher Jordan, Jared Ostmeyer, Adam Buntzman, Florian Rubelt, Marco L. Davila, Nancy L. Monson, Nancy L. Monson, Richard H. Scheuermann, Richard H. Scheuermann, Richard H. Scheuermann, Lindsay G. Cowell
Published 2018-05-01

Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells

by Natasja Wulff Pedersen, P. Anoop Chandran, Yu Qian, Jonathan Rebhahn, Nadia Viborg Petersen, Mathilde Dalsgaard Hoff, Scott White, Alexandra J. Lee, Rick Stanton, Charlotte Halgreen, Kivin Jakobsen, Tim Mosmann, Cécile Gouttefangeas, Cliburn Chan, Richard H. Scheuermann, Richard H. Scheuermann, Sine Reker Hadrup
Published 2017-07-01

A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway

by Mark A. Miller, Terri Schwartz, Brett E. Pickett, Sherry He, Edward B. Klem, Richard H. Scheuermann, Maria Passarotti, Seth Kaufman, Maureen A. O’Leary
Published 2015-03-01

A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway

by Mark A. Miller, Terri Schwartz, Brett E. Pickett, Sherry He, Edward B. Klem, Richard H. Scheuermann, Maria Passarotti, Seth Kaufman, Maureen A. O'Leary
Published 2015-01-01

Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells

by David M. Brown, Alison M. Hixon, Lauren M. Oldfield, Yun Zhang, Mark Novotny, Wei Wang, Suman R. Das, Reed S. Shabman, Kenneth L. Tyler, Richard H. Scheuermann
Published 2018-10-01

VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data

by Scott Christley, Mikhail K. Levin, Inimary T. Toby, John M. Fonner, Nancy L. Monson, William H. Rounds, Florian Rubelt, Walter Scarborough, Richard H. Scheuermann, Lindsay G. Cowell
Published 2017-10-01

Multi-Omic Data Integration Allows Baseline Immune Signatures to Predict Hepatitis B Vaccine Response in a Small Cohort

by Casey P. Shannon, Casey P. Shannon, Travis M. Blimkie, Rym Ben-Othman, Rym Ben-Othman, Nicole Gladish, Nelly Amenyogbe, Nelly Amenyogbe, Sibyl Drissler, Rachel D. Edgar, Rachel D. Edgar, Queenie Chan, Mel Krajden, Leonard J. Foster, Michael S. Kobor, William W. Mohn, Ryan R. Brinkman, Kim-Anh Le Cao, Richard H. Scheuermann, Richard H. Scheuermann, Richard H. Scheuermann, Scott J. Tebbutt, Scott J. Tebbutt, Scott J. Tebbutt, Robert E.W. Hancock, Wayne C. Koff, Tobias R. Kollmann, Tobias R. Kollmann, Manish Sadarangani, Manish Sadarangani, Amy Huei-Yi Lee
Published 2020-11-01

Virus Pathogen Database and Analysis Resource (ViPR): A Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community

by Yun Zhang, Edward B. Klem, Wei Jen, Richard H. Scheuermann, Christopher N. Larsen, Sam Zaremba, Sanjeev Kumar, Brett E. Pickett, Douglas S. Greer, Zhiping Gu, Guangyu Sun, Liwei Zhou, Lucy Stewart
Published 2012-11-01

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop

by Qiandong Zeng, William Klimke, Peter Sterk, Susmita Shrivastava, Ramana Madupu, Richard H. Scheuermann, Seth Schobel, Donald Seto, Yiming Bao, Carla Kuiken, Elliot J. Lefkowitz, Philippe Le Mercier, Raphael Leplae, Tatiana Tatusova, James Rodney Brister
Published 2010-10-01

Cell type discovery and representation in the era of high-content single cell phenotyping

by Trygve Bakken, Lindsay Cowell, Brian D. Aevermann, Mark Novotny, Rebecca Hodge, Jeremy A. Miller, Alexandra Lee, Ivan Chang, Jamison McCorrison, Bali Pulendran, Yu Qian, Nicholas J. Schork, Roger S. Lasken, Ed S. Lein, Richard H. Scheuermann
Published 2017-12-01

Complete genome sequence of Francisella tularensis subspecies holarctica FTNF002-00.

by Ravi D Barabote, Gary Xie, Thomas S Brettin, Steven H Hinrichs, Paul D Fey, Justin J Jay, Jennifer L Engle, Shubhada D Godbole, Jyothi M Noronha, Richard H Scheuermann, Liwei W Zhou, Christine Lion, Michael P Dempsey
Published 2009-09-01

A system-view of Bordetella pertussis booster vaccine responses in adults primed with whole-cell versus acellular vaccine in infancy

by Ricardo da Silva Antunes, Ferran Soldevila, Mikhail Pomaznoy, Mariana Babor, Jason Bennett, Yuan Tian, Natalie Khalil, Yu Qian, Aishwarya Mandava, Richard H. Scheuermann, Mario Cortese, Bali Pulendran, Christopher D. Petro, Adrienne P. Gilkes, Lisa A. Purcell, Alessandro Sette, Bjoern Peters
Published 2021-04-01

Unbiased analysis of peripheral blood mononuclear cells reveals CD4 T cell response to RSV matrix protein

by Juilee Thakar, Yu Qian, Lauren Benoodt, David Roumanes, Xing Qiu, Nathan Laniewski, ChinYi Chu, Christopher Slaunwhite, Lu Wang, Aishwarya Mandava, Ivan Chang, Ann R. Falsey, Mary T. Caserta, Thomas J. Mariani, Richard H. Scheuermann, Edward E. Walsh, David J. Topham
Published 2020-08-01

A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses

by Tavis K. Anderson, Catherine A. Macken, Nicola S. Lewis, Richard H. Scheuermann, Kristien Van Reeth, Ian H. Brown, Sabrina L. Swenson, Gaelle Simon, Takehiko Saito, Yohannes Berhane, Janice Ciacci-Zanella, Ariel Pereda, C. Todd Davis, Ruben O. Donis, Richard J. Webby, Amy L. Vincent, Anice C. Lowen
Published 2016-12-01

Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis.

by Stephen M Beckstrom-Sternberg, Raymond K Auerbach, Shubhada Godbole, John V Pearson, James S Beckstrom-Sternberg, Zuoming Deng, Christine Munk, Kristy Kubota, Yan Zhou, David Bruce, Jyothi Noronha, Richard H Scheuermann, Aihui Wang, Xianying Wei, Jianjun Wang, Jicheng Hao, David M Wagner, Thomas S Brettin, Nancy Brown, Paul Gilna, Paul S Keim
Published 2007-09-01

Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults

by Rym Ben-Othman, Rym Ben-Othman, Bing Cai, Aaron C. Liu, Natallia Varankovich, Daniel He, Travis M. Blimkie, Amy H. Lee, Erin E. Gill, Mark Novotny, Brian Aevermann, Sibyl Drissler, Casey P. Shannon, Sarah McCann, Kim Marty, Gordean Bjornson, Rachel D. Edgar, David Tse Shen Lin, Nicole Gladish, Julia Maclsaac, Nelly Amenyogbe, Queenie Chan, Alba Llibre, Joyce Collin, Elise Landais, Elise Landais, Khoa Le, Khoa Le, Samantha M. Reiss, Wayne C. Koff, Colin Havenar-Daughton, Manraj Heran, Bippan Sangha, David Walt, Mel Krajden, Shane Crotty, Devin Sok, Devin Sok, Bryan Briney, Dennis R. Burton, Darragh Duffy, Leonard J. Foster, William W. Mohn, Michael S. Kobor, Scott J. Tebbutt, Scott J. Tebbutt, Ryan R. Brinkman, Ryan R. Brinkman, Richard H. Scheuermann, Richard H. Scheuermann, Robert E. W. Hancock, Tobias R. Kollmann, Tobias R. Kollmann, Manish Sadarangani
Published 2020-11-01

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types.

by Trygve E Bakken, Rebecca D Hodge, Jeremy A Miller, Zizhen Yao, Thuc Nghi Nguyen, Brian Aevermann, Eliza Barkan, Darren Bertagnolli, Tamara Casper, Nick Dee, Emma Garren, Jeff Goldy, Lucas T Graybuck, Matthew Kroll, Roger S Lasken, Kanan Lathia, Sheana Parry, Christine Rimorin, Richard H Scheuermann, Nicholas J Schork, Soraya I Shehata, Michael Tieu, John W Phillips, Amy Bernard, Kimberly A Smith, Hongkui Zeng, Ed S Lein, Bosiljka Tasic
Published 2018-01-01