CeTF: an R/Bioconductor package for transcription factor co-expression networks using regulatory impact factors (RIF) and partial correlation and information (PCIT) analysis

CeTF: an R/Bioconductor package for transcription factor co-expression networks using regulatory impact factors (RIF) and partial correlation and information (PCIT) analysis

Abstract Background Finding meaningful gene-gene interaction and the main Transcription Factors (TFs) in co-expression networks is one of the most important challenges in gene expression data mining. Results Here, we developed the R package “CeTF” that integrates the Partial Correlation with Informa...

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Bibliographic Details
Main Authors: Carlos Alberto Oliveira de Biagi, Ricardo Perecin Nociti, Danielle Barbosa Brotto, Breno Osvaldo Funicheli, Patrícia de Cássia Ruy, João Paulo Bianchi Ximenez, David Livingstone Alves Figueiredo, Wilson Araújo Silva
Format: Article
Language:English
Published: BMC 2021-08-01
Series:BMC Genomics
Subjects:
Bioinformatics
R package
R
Transcript factors
Network
Online Access:https://doi.org/10.1186/s12864-021-07918-2

Internet

https://doi.org/10.1186/s12864-021-07918-2

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