The burden of typhoid fever in low- and middle-income countries: A meta-regression approach.

BACKGROUND:Upcoming vaccination efforts against typhoid fever require an assessment of the baseline burden of disease in countries at risk. There are no typhoid incidence data from most low- and middle-income countries (LMICs), so model-based estimates offer insights for decision-makers in the absen...

Full description

Bibliographic Details
Main Authors: Marina Antillón, Joshua L Warren, Forrest W Crawford, Daniel M Weinberger, Esra Kürüm, Gi Deok Pak, Florian Marks, Virginia E Pitzer
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2017-02-01
Series:PLoS Neglected Tropical Diseases
Online Access:http://europepmc.org/articles/PMC5344533?pdf=render
id doaj-242dd5ac7b92462cbb85639c7433d1c1
record_format Article
spelling doaj-242dd5ac7b92462cbb85639c7433d1c12020-11-24T20:41:38ZengPublic Library of Science (PLoS)PLoS Neglected Tropical Diseases1935-27271935-27352017-02-01112e000537610.1371/journal.pntd.0005376The burden of typhoid fever in low- and middle-income countries: A meta-regression approach.Marina AntillónJoshua L WarrenForrest W CrawfordDaniel M WeinbergerEsra KürümGi Deok PakFlorian MarksVirginia E PitzerBACKGROUND:Upcoming vaccination efforts against typhoid fever require an assessment of the baseline burden of disease in countries at risk. There are no typhoid incidence data from most low- and middle-income countries (LMICs), so model-based estimates offer insights for decision-makers in the absence of readily available data. METHODS:We developed a mixed-effects model fit to data from 32 population-based studies of typhoid incidence in 22 locations in 14 countries. We tested the contribution of economic and environmental indices for predicting typhoid incidence using a stochastic search variable selection algorithm. We performed out-of-sample validation to assess the predictive performance of the model. RESULTS:We estimated that 17.8 million cases of typhoid fever occur each year in LMICs (95% credible interval: 6.9-48.4 million). Central Africa was predicted to experience the highest incidence of typhoid, followed by select countries in Central, South, and Southeast Asia. Incidence typically peaked in the 2-4 year old age group. Models incorporating widely available economic and environmental indicators were found to describe incidence better than null models. CONCLUSIONS:Recent estimates of typhoid burden may under-estimate the number of cases and magnitude of uncertainty in typhoid incidence. Our analysis permits prediction of overall as well as age-specific incidence of typhoid fever in LMICs, and incorporates uncertainty around the model structure and estimates of the predictors. Future studies are needed to further validate and refine model predictions and better understand year-to-year variation in cases.http://europepmc.org/articles/PMC5344533?pdf=render
collection DOAJ
language English
format Article
sources DOAJ
author Marina Antillón
Joshua L Warren
Forrest W Crawford
Daniel M Weinberger
Esra Kürüm
Gi Deok Pak
Florian Marks
Virginia E Pitzer
spellingShingle Marina Antillón
Joshua L Warren
Forrest W Crawford
Daniel M Weinberger
Esra Kürüm
Gi Deok Pak
Florian Marks
Virginia E Pitzer
The burden of typhoid fever in low- and middle-income countries: A meta-regression approach.
PLoS Neglected Tropical Diseases
author_facet Marina Antillón
Joshua L Warren
Forrest W Crawford
Daniel M Weinberger
Esra Kürüm
Gi Deok Pak
Florian Marks
Virginia E Pitzer
author_sort Marina Antillón
title The burden of typhoid fever in low- and middle-income countries: A meta-regression approach.
title_short The burden of typhoid fever in low- and middle-income countries: A meta-regression approach.
title_full The burden of typhoid fever in low- and middle-income countries: A meta-regression approach.
title_fullStr The burden of typhoid fever in low- and middle-income countries: A meta-regression approach.
title_full_unstemmed The burden of typhoid fever in low- and middle-income countries: A meta-regression approach.
title_sort burden of typhoid fever in low- and middle-income countries: a meta-regression approach.
publisher Public Library of Science (PLoS)
series PLoS Neglected Tropical Diseases
issn 1935-2727
1935-2735
publishDate 2017-02-01
description BACKGROUND:Upcoming vaccination efforts against typhoid fever require an assessment of the baseline burden of disease in countries at risk. There are no typhoid incidence data from most low- and middle-income countries (LMICs), so model-based estimates offer insights for decision-makers in the absence of readily available data. METHODS:We developed a mixed-effects model fit to data from 32 population-based studies of typhoid incidence in 22 locations in 14 countries. We tested the contribution of economic and environmental indices for predicting typhoid incidence using a stochastic search variable selection algorithm. We performed out-of-sample validation to assess the predictive performance of the model. RESULTS:We estimated that 17.8 million cases of typhoid fever occur each year in LMICs (95% credible interval: 6.9-48.4 million). Central Africa was predicted to experience the highest incidence of typhoid, followed by select countries in Central, South, and Southeast Asia. Incidence typically peaked in the 2-4 year old age group. Models incorporating widely available economic and environmental indicators were found to describe incidence better than null models. CONCLUSIONS:Recent estimates of typhoid burden may under-estimate the number of cases and magnitude of uncertainty in typhoid incidence. Our analysis permits prediction of overall as well as age-specific incidence of typhoid fever in LMICs, and incorporates uncertainty around the model structure and estimates of the predictors. Future studies are needed to further validate and refine model predictions and better understand year-to-year variation in cases.
url http://europepmc.org/articles/PMC5344533?pdf=render
work_keys_str_mv AT marinaantillon theburdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT joshualwarren theburdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT forrestwcrawford theburdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT danielmweinberger theburdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT esrakurum theburdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT gideokpak theburdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT florianmarks theburdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT virginiaepitzer theburdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT marinaantillon burdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT joshualwarren burdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT forrestwcrawford burdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT danielmweinberger burdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT esrakurum burdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT gideokpak burdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT florianmarks burdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
AT virginiaepitzer burdenoftyphoidfeverinlowandmiddleincomecountriesametaregressionapproach
_version_ 1716824426366894080