Molecular model of a sensor of two-component signaling system

Abstract Two-component systems (TCS) are widespread signaling systems present in all domains of life. TCS typically consist of a signal receptor/transducer and a response regulator. The receptors (histidine kinases, chemoreceptors and photoreceptors) are often embedded in the membrane and have a sim...

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Main Authors: Yury L. Ryzhykau, Philipp S. Orekhov, Maksim I. Rulev, Alexey V. Vlasov, Igor A. Melnikov, Dmytro A. Volkov, Mikhail Yu. Nikolaev, Dmitrii V. Zabelskii, Tatiana N. Murugova, Vladimir V. Chupin, Andrey V. Rogachev, Andrey Yu. Gruzinov, Dmitri I. Svergun, Martha E. Brennich, Ivan Yu. Gushchin, Montserrat Soler-Lopez, Arne Bothe, Georg Büldt, Gordon Leonard, Martin Engelhard, Alexander I. Kuklin, Valentin I. Gordeliy
Format: Article
Language:English
Published: Nature Publishing Group 2021-05-01
Series:Scientific Reports
Online Access:https://doi.org/10.1038/s41598-021-89613-6
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spelling doaj-3f760df645e345b1a2dd8988f064b12e2021-05-30T11:35:05ZengNature Publishing GroupScientific Reports2045-23222021-05-0111111510.1038/s41598-021-89613-6Molecular model of a sensor of two-component signaling systemYury L. Ryzhykau0Philipp S. Orekhov1Maksim I. Rulev2Alexey V. Vlasov3Igor A. Melnikov4Dmytro A. Volkov5Mikhail Yu. Nikolaev6Dmitrii V. Zabelskii7Tatiana N. Murugova8Vladimir V. Chupin9Andrey V. Rogachev10Andrey Yu. Gruzinov11Dmitri I. Svergun12Martha E. Brennich13Ivan Yu. Gushchin14Montserrat Soler-Lopez15Arne Bothe16Georg Büldt17Gordon Leonard18Martin Engelhard19Alexander I. Kuklin20Valentin I. Gordeliy21Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyStructural Biology Group, European Synchrotron Radiation FacilityResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyStructural Biology Group, European Synchrotron Radiation FacilityInstitute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum JülichResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyEuropean Molecular Biology Laboratory, Hamburg OutstationEuropean Molecular Biology Laboratory, Hamburg OutstationSynchrotron Crystallography Team, EMBL Grenoble OutstationResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyStructural Biology Group, European Synchrotron Radiation FacilityDepartment Structural Biochemistry, Max Planck Institute of Molecular PhysiologyResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyStructural Biology Group, European Synchrotron Radiation FacilityDepartment Structural Biochemistry, Max Planck Institute of Molecular PhysiologyResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyResearch Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and TechnologyAbstract Two-component systems (TCS) are widespread signaling systems present in all domains of life. TCS typically consist of a signal receptor/transducer and a response regulator. The receptors (histidine kinases, chemoreceptors and photoreceptors) are often embedded in the membrane and have a similar modular structure. Chemoreceptors were shown to function in highly ordered arrays, with trimers of dimers being the smallest functional unit. However, much less is known about photoreceptors. Here, we use small-angle scattering (SAS) to show that detergent-solubilized sensory rhodopsin II in complex with its cognate transducer forms dimers at low salt concentration, which associate into trimers of dimers at higher buffer molarities. We then fit an atomistic model of the whole complex into the SAS data. The obtained results suggest that the trimer of dimers is "tripod"-shaped and that the contacts between the dimers occur only through their cytoplasmic regions, whereas the transmembrane regions remain unconnected.https://doi.org/10.1038/s41598-021-89613-6
collection DOAJ
language English
format Article
sources DOAJ
author Yury L. Ryzhykau
Philipp S. Orekhov
Maksim I. Rulev
Alexey V. Vlasov
Igor A. Melnikov
Dmytro A. Volkov
Mikhail Yu. Nikolaev
Dmitrii V. Zabelskii
Tatiana N. Murugova
Vladimir V. Chupin
Andrey V. Rogachev
Andrey Yu. Gruzinov
Dmitri I. Svergun
Martha E. Brennich
Ivan Yu. Gushchin
Montserrat Soler-Lopez
Arne Bothe
Georg Büldt
Gordon Leonard
Martin Engelhard
Alexander I. Kuklin
Valentin I. Gordeliy
spellingShingle Yury L. Ryzhykau
Philipp S. Orekhov
Maksim I. Rulev
Alexey V. Vlasov
Igor A. Melnikov
Dmytro A. Volkov
Mikhail Yu. Nikolaev
Dmitrii V. Zabelskii
Tatiana N. Murugova
Vladimir V. Chupin
Andrey V. Rogachev
Andrey Yu. Gruzinov
Dmitri I. Svergun
Martha E. Brennich
Ivan Yu. Gushchin
Montserrat Soler-Lopez
Arne Bothe
Georg Büldt
Gordon Leonard
Martin Engelhard
Alexander I. Kuklin
Valentin I. Gordeliy
Molecular model of a sensor of two-component signaling system
Scientific Reports
author_facet Yury L. Ryzhykau
Philipp S. Orekhov
Maksim I. Rulev
Alexey V. Vlasov
Igor A. Melnikov
Dmytro A. Volkov
Mikhail Yu. Nikolaev
Dmitrii V. Zabelskii
Tatiana N. Murugova
Vladimir V. Chupin
Andrey V. Rogachev
Andrey Yu. Gruzinov
Dmitri I. Svergun
Martha E. Brennich
Ivan Yu. Gushchin
Montserrat Soler-Lopez
Arne Bothe
Georg Büldt
Gordon Leonard
Martin Engelhard
Alexander I. Kuklin
Valentin I. Gordeliy
author_sort Yury L. Ryzhykau
title Molecular model of a sensor of two-component signaling system
title_short Molecular model of a sensor of two-component signaling system
title_full Molecular model of a sensor of two-component signaling system
title_fullStr Molecular model of a sensor of two-component signaling system
title_full_unstemmed Molecular model of a sensor of two-component signaling system
title_sort molecular model of a sensor of two-component signaling system
publisher Nature Publishing Group
series Scientific Reports
issn 2045-2322
publishDate 2021-05-01
description Abstract Two-component systems (TCS) are widespread signaling systems present in all domains of life. TCS typically consist of a signal receptor/transducer and a response regulator. The receptors (histidine kinases, chemoreceptors and photoreceptors) are often embedded in the membrane and have a similar modular structure. Chemoreceptors were shown to function in highly ordered arrays, with trimers of dimers being the smallest functional unit. However, much less is known about photoreceptors. Here, we use small-angle scattering (SAS) to show that detergent-solubilized sensory rhodopsin II in complex with its cognate transducer forms dimers at low salt concentration, which associate into trimers of dimers at higher buffer molarities. We then fit an atomistic model of the whole complex into the SAS data. The obtained results suggest that the trimer of dimers is "tripod"-shaped and that the contacts between the dimers occur only through their cytoplasmic regions, whereas the transmembrane regions remain unconnected.
url https://doi.org/10.1038/s41598-021-89613-6
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