Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters

Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters

Abstract Background The ascomycete fungus Colletotrichum higginsianum causes anthracnose disease of brassica crops and the model plant Arabidopsis thaliana. Previous versions of the genome sequence were highly fragmented, causing errors in the prediction of protein-coding genes and preventing the an...

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Bibliographic Details
Main Authors: Jean-Félix Dallery, Nicolas Lapalu, Antonios Zampounis, Sandrine Pigné, Isabelle Luyten, Joëlle Amselem, Alexander H. J. Wittenberg, Shiguo Zhou, Marisa V. de Queiroz, Guillaume P. Robin, Annie Auger, Matthieu Hainaut, Bernard Henrissat, Ki-Tae Kim, Yong-Hwan Lee, Olivier Lespinet, David C. Schwartz, Michael R. Thon, Richard J. O’Connell
Format: Article
Language:English
Published: BMC 2017-08-01
Series:BMC Genomics
Subjects:
Fungal genome
SMRT sequencing
optical map
transposable elements
secondary metabolism genes
subtelomeres
Online Access:http://link.springer.com/article/10.1186/s12864-017-4083-x

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http://link.springer.com/article/10.1186/s12864-017-4083-x

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