Viscous hydrophilic injection matrices for serial crystallography
Serial (femtosecond) crystallography at synchrotron and X-ray free-electron laser (XFEL) sources distributes the absorbed radiation dose over all crystals used for data collection and therefore allows measurement of radiation damage prone systems, including the use of microcrystals for room-temperat...
Main Authors: | , , , , , , , , , |
---|---|
Format: | Article |
Language: | English |
Published: |
International Union of Crystallography
2017-07-01
|
Series: | IUCrJ |
Subjects: | |
Online Access: | http://scripts.iucr.org/cgi-bin/paper?S2052252517005140 |
id |
doaj-6328d4fa858149478ab0c0ff8fb3de4a |
---|---|
record_format |
Article |
spelling |
doaj-6328d4fa858149478ab0c0ff8fb3de4a2020-11-24T21:40:20ZengInternational Union of CrystallographyIUCrJ2052-25252017-07-014440041010.1107/S2052252517005140ec5001Viscous hydrophilic injection matrices for serial crystallographyGabriela Kovácsová0Marie Luise Grünbein1Marco Kloos2Thomas R. M. Barends3Ramona Schlesinger4Joachim Heberle5Wolfgang Kabsch6Robert L. Shoeman7R. Bruce Doak8Ilme Schlichting9Department of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, Heidelberg 69120, GermanyDepartment of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, Heidelberg 69120, GermanyDepartment of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, Heidelberg 69120, GermanyDepartment of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, Heidelberg 69120, GermanyGenetic Biophysics, Department of Physics, Freie Universität Berlin, Arnimallee 14, Berlin 14195, GermanyExperimental Molecular Biophysics, Department of Physics, Freie Universität Berlin, Arnimallee 14, Berlin 14195, GermanyDepartment of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, Heidelberg 69120, GermanyDepartment of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, Heidelberg 69120, GermanyDepartment of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, Heidelberg 69120, GermanyDepartment of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, Heidelberg 69120, GermanySerial (femtosecond) crystallography at synchrotron and X-ray free-electron laser (XFEL) sources distributes the absorbed radiation dose over all crystals used for data collection and therefore allows measurement of radiation damage prone systems, including the use of microcrystals for room-temperature measurements. Serial crystallography relies on fast and efficient exchange of crystals upon X-ray exposure, which can be achieved using a variety of methods, including various injection techniques. The latter vary significantly in their flow rates – gas dynamic virtual nozzle based injectors provide very thin fast-flowing jets, whereas high-viscosity extrusion injectors produce much thicker streams with flow rates two to three orders of magnitude lower. High-viscosity extrusion results in much lower sample consumption, as its sample delivery speed is commensurate both with typical XFEL repetition rates and with data acquisition rates at synchrotron sources. An obvious viscous injection medium is lipidic cubic phase (LCP) as it is used for in meso membrane protein crystallization. However, LCP has limited compatibility with many crystallization conditions. While a few other viscous media have been described in the literature, there is an ongoing need to identify additional injection media for crystal embedding. Critical attributes are reliable injection properties and a broad chemical compatibility to accommodate samples as heterogeneous and sensitive as protein crystals. Here, the use of two novel hydrogels as viscous injection matrices is described, namely sodium carboxymethyl cellulose and the thermo-reversible block polymer Pluronic F-127. Both are compatible with various crystallization conditions and yield acceptable X-ray background. The stability and velocity of the extruded stream were also analysed and the dependence of the stream velocity on the flow rate was measured. In contrast with previously characterized injection media, both new matrices afford very stable adjustable streams suitable for time-resolved measurements.http://scripts.iucr.org/cgi-bin/paper?S2052252517005140high-throughput serial crystallographyroom-temperature crystallographymicrocrystal injectionXFELhigh-viscosity extrusion |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Gabriela Kovácsová Marie Luise Grünbein Marco Kloos Thomas R. M. Barends Ramona Schlesinger Joachim Heberle Wolfgang Kabsch Robert L. Shoeman R. Bruce Doak Ilme Schlichting |
spellingShingle |
Gabriela Kovácsová Marie Luise Grünbein Marco Kloos Thomas R. M. Barends Ramona Schlesinger Joachim Heberle Wolfgang Kabsch Robert L. Shoeman R. Bruce Doak Ilme Schlichting Viscous hydrophilic injection matrices for serial crystallography IUCrJ high-throughput serial crystallography room-temperature crystallography microcrystal injection XFEL high-viscosity extrusion |
author_facet |
Gabriela Kovácsová Marie Luise Grünbein Marco Kloos Thomas R. M. Barends Ramona Schlesinger Joachim Heberle Wolfgang Kabsch Robert L. Shoeman R. Bruce Doak Ilme Schlichting |
author_sort |
Gabriela Kovácsová |
title |
Viscous hydrophilic injection matrices for serial crystallography |
title_short |
Viscous hydrophilic injection matrices for serial crystallography |
title_full |
Viscous hydrophilic injection matrices for serial crystallography |
title_fullStr |
Viscous hydrophilic injection matrices for serial crystallography |
title_full_unstemmed |
Viscous hydrophilic injection matrices for serial crystallography |
title_sort |
viscous hydrophilic injection matrices for serial crystallography |
publisher |
International Union of Crystallography |
series |
IUCrJ |
issn |
2052-2525 |
publishDate |
2017-07-01 |
description |
Serial (femtosecond) crystallography at synchrotron and X-ray free-electron laser (XFEL) sources distributes the absorbed radiation dose over all crystals used for data collection and therefore allows measurement of radiation damage prone systems, including the use of microcrystals for room-temperature measurements. Serial crystallography relies on fast and efficient exchange of crystals upon X-ray exposure, which can be achieved using a variety of methods, including various injection techniques. The latter vary significantly in their flow rates – gas dynamic virtual nozzle based injectors provide very thin fast-flowing jets, whereas high-viscosity extrusion injectors produce much thicker streams with flow rates two to three orders of magnitude lower. High-viscosity extrusion results in much lower sample consumption, as its sample delivery speed is commensurate both with typical XFEL repetition rates and with data acquisition rates at synchrotron sources. An obvious viscous injection medium is lipidic cubic phase (LCP) as it is used for in meso membrane protein crystallization. However, LCP has limited compatibility with many crystallization conditions. While a few other viscous media have been described in the literature, there is an ongoing need to identify additional injection media for crystal embedding. Critical attributes are reliable injection properties and a broad chemical compatibility to accommodate samples as heterogeneous and sensitive as protein crystals. Here, the use of two novel hydrogels as viscous injection matrices is described, namely sodium carboxymethyl cellulose and the thermo-reversible block polymer Pluronic F-127. Both are compatible with various crystallization conditions and yield acceptable X-ray background. The stability and velocity of the extruded stream were also analysed and the dependence of the stream velocity on the flow rate was measured. In contrast with previously characterized injection media, both new matrices afford very stable adjustable streams suitable for time-resolved measurements. |
topic |
high-throughput serial crystallography room-temperature crystallography microcrystal injection XFEL high-viscosity extrusion |
url |
http://scripts.iucr.org/cgi-bin/paper?S2052252517005140 |
work_keys_str_mv |
AT gabrielakovacsova viscoushydrophilicinjectionmatricesforserialcrystallography AT marieluisegrunbein viscoushydrophilicinjectionmatricesforserialcrystallography AT marcokloos viscoushydrophilicinjectionmatricesforserialcrystallography AT thomasrmbarends viscoushydrophilicinjectionmatricesforserialcrystallography AT ramonaschlesinger viscoushydrophilicinjectionmatricesforserialcrystallography AT joachimheberle viscoushydrophilicinjectionmatricesforserialcrystallography AT wolfgangkabsch viscoushydrophilicinjectionmatricesforserialcrystallography AT robertlshoeman viscoushydrophilicinjectionmatricesforserialcrystallography AT rbrucedoak viscoushydrophilicinjectionmatricesforserialcrystallography AT ilmeschlichting viscoushydrophilicinjectionmatricesforserialcrystallography |
_version_ |
1725926647641669632 |