Databases for multilevel biophysiology research available at Physiome.jp
Physiome.jp (http://physiome.jp) is a portal site inaugurated in 2007 to support model-based research in physiome and systems biology. At Physiome.jp, several tools and databases are available to support construction of physiological, multi-hierarchical, large-scale models. There are three databases...
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Online Access: | http://journal.frontiersin.org/Journal/10.3389/fphys.2015.00251/full |
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doaj-69ce47bbadf24972b186077211e772082020-11-24T22:29:36ZengFrontiers Media S.A.Frontiers in Physiology1664-042X2015-09-01610.3389/fphys.2015.00251156318Databases for multilevel biophysiology research available at Physiome.jpYoshiyuki eAsai0Takeshi eAbe1Li eLi2Hideki eOka3Taishin eNomura4Hiroaki eKitano5Hiroaki eKitano6Okinawa Institute of Science and TechnologyOkinawa Institute of Science and TechnologyIntasect Communications IncRIKENOsaka UniversityOkinawa Institute of Science and TechnologyThe Systems Biology InstitutePhysiome.jp (http://physiome.jp) is a portal site inaugurated in 2007 to support model-based research in physiome and systems biology. At Physiome.jp, several tools and databases are available to support construction of physiological, multi-hierarchical, large-scale models. There are three databases in Physiome.jp, housing mathematical models, morphological data, and time-series data. In late 2013, the site was fully renovated, and in May 2015, new functions were implemented to provide information infrastructure to support collaborative activities for developing models and performing simulations within the database framework. This article describes updates to the databases implemented since 2013, including cooperation among the three databases, interactive model browsing, user management, version management of models, management of parameter sets, and interoperability with applications.http://journal.frontiersin.org/Journal/10.3389/fphys.2015.00251/fulldatabasesMultilevel Modelsteam developmentmodel sharingphysiome and systems biologyinteroperability among databases |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Yoshiyuki eAsai Takeshi eAbe Li eLi Hideki eOka Taishin eNomura Hiroaki eKitano Hiroaki eKitano |
spellingShingle |
Yoshiyuki eAsai Takeshi eAbe Li eLi Hideki eOka Taishin eNomura Hiroaki eKitano Hiroaki eKitano Databases for multilevel biophysiology research available at Physiome.jp Frontiers in Physiology databases Multilevel Models team development model sharing physiome and systems biology interoperability among databases |
author_facet |
Yoshiyuki eAsai Takeshi eAbe Li eLi Hideki eOka Taishin eNomura Hiroaki eKitano Hiroaki eKitano |
author_sort |
Yoshiyuki eAsai |
title |
Databases for multilevel biophysiology research available at Physiome.jp |
title_short |
Databases for multilevel biophysiology research available at Physiome.jp |
title_full |
Databases for multilevel biophysiology research available at Physiome.jp |
title_fullStr |
Databases for multilevel biophysiology research available at Physiome.jp |
title_full_unstemmed |
Databases for multilevel biophysiology research available at Physiome.jp |
title_sort |
databases for multilevel biophysiology research available at physiome.jp |
publisher |
Frontiers Media S.A. |
series |
Frontiers in Physiology |
issn |
1664-042X |
publishDate |
2015-09-01 |
description |
Physiome.jp (http://physiome.jp) is a portal site inaugurated in 2007 to support model-based research in physiome and systems biology. At Physiome.jp, several tools and databases are available to support construction of physiological, multi-hierarchical, large-scale models. There are three databases in Physiome.jp, housing mathematical models, morphological data, and time-series data. In late 2013, the site was fully renovated, and in May 2015, new functions were implemented to provide information infrastructure to support collaborative activities for developing models and performing simulations within the database framework. This article describes updates to the databases implemented since 2013, including cooperation among the three databases, interactive model browsing, user management, version management of models, management of parameter sets, and interoperability with applications. |
topic |
databases Multilevel Models team development model sharing physiome and systems biology interoperability among databases |
url |
http://journal.frontiersin.org/Journal/10.3389/fphys.2015.00251/full |
work_keys_str_mv |
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1725744018361417728 |