Single-Turnover Variable Chlorophyll Fluorescence as a Tool for Assessing Phytoplankton Photosynthesis and Primary Productivity: Opportunities, Caveats and Recommendations

Phytoplankton photosynthetic physiology can be investigated through single-turnover variable chlorophyll fluorescence (ST-ChlF) approaches, which carry unique potential to autonomously collect data at high spatial and temporal resolution. Over the past decades, significant progress has been made in...

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Main Authors: Nina Schuback, Philippe D. Tortell, Ilana Berman-Frank, Douglas A. Campbell, Aurea Ciotti, Emilie Courtecuisse, Zachary K. Erickson, Tetsuichi Fujiki, Kimberly Halsey, Anna E. Hickman, Yannick Huot, Maxime Y. Gorbunov, David J. Hughes, Zbigniew S. Kolber, C. Mark Moore, Kevin Oxborough, Ondřej Prášil, Charlotte M. Robinson, Thomas J. Ryan-Keogh, Greg Silsbe, Stefan Simis, David J. Suggett, Sandy Thomalla, Deepa R. Varkey
Format: Article
Language:English
Published: Frontiers Media S.A. 2021-07-01
Series:Frontiers in Marine Science
Subjects:
Online Access:https://www.frontiersin.org/articles/10.3389/fmars.2021.690607/full
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author Nina Schuback
Nina Schuback
Philippe D. Tortell
Philippe D. Tortell
Ilana Berman-Frank
Douglas A. Campbell
Aurea Ciotti
Emilie Courtecuisse
Zachary K. Erickson
Tetsuichi Fujiki
Kimberly Halsey
Anna E. Hickman
Yannick Huot
Maxime Y. Gorbunov
David J. Hughes
Zbigniew S. Kolber
C. Mark Moore
Kevin Oxborough
Kevin Oxborough
Ondřej Prášil
Charlotte M. Robinson
Thomas J. Ryan-Keogh
Greg Silsbe
Stefan Simis
David J. Suggett
Sandy Thomalla
Sandy Thomalla
Deepa R. Varkey
spellingShingle Nina Schuback
Nina Schuback
Philippe D. Tortell
Philippe D. Tortell
Ilana Berman-Frank
Douglas A. Campbell
Aurea Ciotti
Emilie Courtecuisse
Zachary K. Erickson
Tetsuichi Fujiki
Kimberly Halsey
Anna E. Hickman
Yannick Huot
Maxime Y. Gorbunov
David J. Hughes
Zbigniew S. Kolber
C. Mark Moore
Kevin Oxborough
Kevin Oxborough
Ondřej Prášil
Charlotte M. Robinson
Thomas J. Ryan-Keogh
Greg Silsbe
Stefan Simis
David J. Suggett
Sandy Thomalla
Sandy Thomalla
Deepa R. Varkey
Single-Turnover Variable Chlorophyll Fluorescence as a Tool for Assessing Phytoplankton Photosynthesis and Primary Productivity: Opportunities, Caveats and Recommendations
Frontiers in Marine Science
variable chlorophyll fluorescence
phytoplankton
photo-physiology
photosynthesis
primary productivity
data synthesis
author_facet Nina Schuback
Nina Schuback
Philippe D. Tortell
Philippe D. Tortell
Ilana Berman-Frank
Douglas A. Campbell
Aurea Ciotti
Emilie Courtecuisse
Zachary K. Erickson
Tetsuichi Fujiki
Kimberly Halsey
Anna E. Hickman
Yannick Huot
Maxime Y. Gorbunov
David J. Hughes
Zbigniew S. Kolber
C. Mark Moore
Kevin Oxborough
Kevin Oxborough
Ondřej Prášil
Charlotte M. Robinson
Thomas J. Ryan-Keogh
Greg Silsbe
Stefan Simis
David J. Suggett
Sandy Thomalla
Sandy Thomalla
Deepa R. Varkey
author_sort Nina Schuback
title Single-Turnover Variable Chlorophyll Fluorescence as a Tool for Assessing Phytoplankton Photosynthesis and Primary Productivity: Opportunities, Caveats and Recommendations
title_short Single-Turnover Variable Chlorophyll Fluorescence as a Tool for Assessing Phytoplankton Photosynthesis and Primary Productivity: Opportunities, Caveats and Recommendations
title_full Single-Turnover Variable Chlorophyll Fluorescence as a Tool for Assessing Phytoplankton Photosynthesis and Primary Productivity: Opportunities, Caveats and Recommendations
title_fullStr Single-Turnover Variable Chlorophyll Fluorescence as a Tool for Assessing Phytoplankton Photosynthesis and Primary Productivity: Opportunities, Caveats and Recommendations
title_full_unstemmed Single-Turnover Variable Chlorophyll Fluorescence as a Tool for Assessing Phytoplankton Photosynthesis and Primary Productivity: Opportunities, Caveats and Recommendations
title_sort single-turnover variable chlorophyll fluorescence as a tool for assessing phytoplankton photosynthesis and primary productivity: opportunities, caveats and recommendations
publisher Frontiers Media S.A.
series Frontiers in Marine Science
issn 2296-7745
publishDate 2021-07-01
description Phytoplankton photosynthetic physiology can be investigated through single-turnover variable chlorophyll fluorescence (ST-ChlF) approaches, which carry unique potential to autonomously collect data at high spatial and temporal resolution. Over the past decades, significant progress has been made in the development and application of ST-ChlF methods in aquatic ecosystems, and in the interpretation of the resulting observations. At the same time, however, an increasing number of sensor types, sampling protocols, and data processing algorithms have created confusion and uncertainty among potential users, with a growing divergence of practice among different research groups. In this review, we assist the existing and upcoming user community by providing an overview of current approaches and consensus recommendations for the use of ST-ChlF measurements to examine in-situ phytoplankton productivity and photo-physiology. We argue that a consistency of practice and adherence to basic operational and quality control standards is critical to ensuring data inter-comparability. Large datasets of inter-comparable and globally coherent ST-ChlF observations hold the potential to reveal large-scale patterns and trends in phytoplankton photo-physiology, photosynthetic rates and bottom-up controls on primary productivity. As such, they hold great potential to provide invaluable physiological observations on the scales relevant for the development and validation of ecosystem models and remote sensing algorithms.
topic variable chlorophyll fluorescence
phytoplankton
photo-physiology
photosynthesis
primary productivity
data synthesis
url https://www.frontiersin.org/articles/10.3389/fmars.2021.690607/full
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spelling doaj-75dcf97c81d64c7b98f8ae3e0360cdda2021-07-14T07:39:34ZengFrontiers Media S.A.Frontiers in Marine Science2296-77452021-07-01810.3389/fmars.2021.690607690607Single-Turnover Variable Chlorophyll Fluorescence as a Tool for Assessing Phytoplankton Photosynthesis and Primary Productivity: Opportunities, Caveats and RecommendationsNina Schuback0Nina Schuback1Philippe D. Tortell2Philippe D. Tortell3Ilana Berman-Frank4Douglas A. Campbell5Aurea Ciotti6Emilie Courtecuisse7Zachary K. Erickson8Tetsuichi Fujiki9Kimberly Halsey10Anna E. Hickman11Yannick Huot12Maxime Y. Gorbunov13David J. Hughes14Zbigniew S. Kolber15C. Mark Moore16Kevin Oxborough17Kevin Oxborough18Ondřej Prášil19Charlotte M. Robinson20Thomas J. Ryan-Keogh21Greg Silsbe22Stefan Simis23David J. Suggett24Sandy Thomalla25Sandy Thomalla26Deepa R. Varkey27Institute of Geological Sciences and Oeschger Center for Climate Change Research, University of Bern, Bern, SwitzerlandSwiss Polar Institute, École Polytechnique Fédérale de Lausanne, Lausanne, SwitzerlandDepartment of Earth, Ocean and Atmospheric Sciences, University of British Columbia, Vancouver, BC, CanadaDepartment of Botany, University of British Columbia, Vancouver, BC, CanadaDepartment of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, IsraelDepartment of Biology, Mount Allison University, Sackville, NB, CanadaCEBIMar, Universidade de São Paulo, São Paulo, BrazilPlymouth Marine Laboratory, Plymouth, United KingdomNASA Postdoctoral Program, Ocean Ecology Laboratory, NASA Goddard Space Flight Center, Greenbelt, MD, United States0Japan Agency for Marine-Earth Science and Technology, Research Institute for Global Change, Yokosuka, Japan1Department of Microbiology, Oregon State University, Corvallis, OR, United States2School of Ocean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, United Kingdom3Département de Géomatique Appliquée, Université de Sherbrooke, Sherbrooke, QC, Canada4Department of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ, United States5Climate Change Cluster, Faculty of Science, University of Technology Sydney, Ultimo, NSW, Australia6Soliense Inc., Shoreham, NY, United States2School of Ocean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, United Kingdom2School of Ocean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, United Kingdom7Chelsea Technologies Ltd., West Molesey, United Kingdom8Center Algatech, Institute of Microbiology, CAS, Tøeboò, Czechia9Remote Sensing and Satellite Research Group, School of Earth and Planetary Sciences, Curtin University, Perth, WA, Australia0Southern Ocean Carbon and Climate Observatory, CSIR, Cape Town, South Africa1Horn Point Lab, University of Maryland Center for Environmental Science, Cambridge, MD, United StatesPlymouth Marine Laboratory, Plymouth, United Kingdom2School of Ocean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, United Kingdom0Southern Ocean Carbon and Climate Observatory, CSIR, Cape Town, South Africa2Marine Research Institute, University of Cape Town, Cape Town, South Africa3Department of Molecular Sciences, Macquarie University, Sydney, NSW, AustraliaPhytoplankton photosynthetic physiology can be investigated through single-turnover variable chlorophyll fluorescence (ST-ChlF) approaches, which carry unique potential to autonomously collect data at high spatial and temporal resolution. Over the past decades, significant progress has been made in the development and application of ST-ChlF methods in aquatic ecosystems, and in the interpretation of the resulting observations. At the same time, however, an increasing number of sensor types, sampling protocols, and data processing algorithms have created confusion and uncertainty among potential users, with a growing divergence of practice among different research groups. In this review, we assist the existing and upcoming user community by providing an overview of current approaches and consensus recommendations for the use of ST-ChlF measurements to examine in-situ phytoplankton productivity and photo-physiology. We argue that a consistency of practice and adherence to basic operational and quality control standards is critical to ensuring data inter-comparability. Large datasets of inter-comparable and globally coherent ST-ChlF observations hold the potential to reveal large-scale patterns and trends in phytoplankton photo-physiology, photosynthetic rates and bottom-up controls on primary productivity. As such, they hold great potential to provide invaluable physiological observations on the scales relevant for the development and validation of ecosystem models and remote sensing algorithms.https://www.frontiersin.org/articles/10.3389/fmars.2021.690607/fullvariable chlorophyll fluorescencephytoplanktonphoto-physiologyphotosynthesisprimary productivitydata synthesis