Ioncopy: an R Shiny app to call copy number alterations in targeted NGS data

Ioncopy: an R Shiny app to call copy number alterations in targeted NGS data

Abstract Background Somatic copy number alterations (CNAs) contribute to the clinically targetable aberrations in the tumor genome. For both routine diagnostics and biomarkers research, CNA analysis in a single assay together with somatic mutations is highly desirable. Results Ioncopy is a validated...

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Bibliographic Details
Main Authors: Jan Budczies, Nicole Pfarr, Eva Romanovsky, Volker Endris, Albrecht Stenzinger, Carsten Denkert
Format: Article
Language:English
Published: BMC 2018-04-01
Series:BMC Bioinformatics
Subjects:
Copy number alterations
NGS
Amplicon sequencing
R Shiny
Online Access:http://link.springer.com/article/10.1186/s12859-018-2159-5

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http://link.springer.com/article/10.1186/s12859-018-2159-5

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