bacterial genome nonhuman 12 Article 11 bacterial virulence 6 controlled study 6 antibiotic resistance 5 bacterial gene 5 bacterial strain 5 bacterium isolate 5 antibiotic sensitivity 3 comparative genomics 3 horizontal gene transfer 3 phylogenetic tree 3 rifampicin 3 unclassified drug 3 whole genome sequencing 3 Genomics 2 Metabolomics 2 Mycobacterium tuberculosis 2 RNA sequencing 2 Staphylococcus aureus 2 amikacin 2 bacterial DNA 2 bacterial protein 2 bioinformatics 2 computer model 2 contig 2 cotrimoxazole 2 daptomycin 2 erythromycin 2