Automating parameter selection to avoid implausible biological pathway models

by Gitter, A., Magnano, C.S
Published 2021

Inference of a Dynamic Aging-related Biological Subnetwork via Network Propagation

by Milenkovic, T., Newaz, K.
Published 2022

Development of an experiment-split method for benchmarking the generalization of a PTM site predictor: Lysine methylome as an example

by Li, L., Ma, C., Zhao, J., Zou, G., Zou, Y.
Published 2021

Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas

by Abbas, S., Contino, G., Devonshire, G., Edwards, P.A.W, Eldridge, M.D, Fitzgerald, R.C, Hsu, R., Killcoyne, S., Ng, A.W.T, Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS) Consortium, Redmond, A.M, Su, J., Tavaré, S., Weaver, J.M.J
Published 2022

WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans

by Arnaboldi, V., Becerra, A., Berriman, M., Cain, S., Chan, J., Chen, W.J, Cho, J., da Veiga Beltrame, E., Davis, P., Diamantakis, S., Gao, S., Grigoriadis, D., Grove, C.A, Harris, T.W, Howe, K.L, Kishore, R., Le, T., Lee, R.Y.N, Luypaert, M., Müller, H.-M, Nakamura, C., Nuin, P., Paulini, M., Quinton-Tulloch, M., Raciti, D., Rodgers, F.H, Russell, M., Schedl, T., Schindelman, G., Singh, A., Stein, L., Sternberg, P.W, Stickland, T., Van Auken, K., Wang, Q., Williams, G., Wright, A.J, Yook, K., Zarowiecki, M.
Published 2022

Evolution of phenotypic fluctuation under host-parasite interactions

by Kaneko, K., Nishiura, N.
Published 2021

Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting

by Corander, J., Mai, T.T, Turner, P.
Published 2021

COSNet i : ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes

by Hsieh, Y.-C, Kopka, J., Martinez-Seidel, F., Pereira Firmino, A.A, Walther, D.
Published 2021

New insights into the specificity and processivity of two novel pectinases from Verticillium dahliae

by Bassard, S., Cherkaoui, M., Habrylo, O., Lecomte, S., Mercadante, D., Pau-Roblot, C., Pelloux, J., Pilard, S., Safran, J., Sénéchal, F., Voxeur, A.
Published 2021

TFTenricher: a python toolbox for annotation enrichment analysis of transcription factor target genes

by Lubovac-Pilav, Z., Magnusson, R.
Published 2021

LPI-deepGBDT: a multiple-layer deep framework based on gradient boosting decision trees for lncRNA–protein interaction identification

by Peng, L., Tian, X., Wang, Z., Zhou, L.
Published 2021

Capsule-LPI: a LncRNA–protein interaction predicting tool based on a capsule network

by Du, W., Feng, S., Han, S., Li, Y., Sun, H., Zhang, Q.
Published 2021

rKOMICS: an R package for processing mitochondrial minicircle assemblies in population-scale genome projects

by Geerts, M., Schnaufer, A., Van den Broeck, F.
Published 2021

Exploring the Genomic Landscape of Cancer Patient Cohorts with GenVisR

by Campbell, K.M, Cotto, K.C, Griffith, M., Griffith, O.L, Skidmore, Z.L
Published 2021

A learning-based method to predict LncRNA-disease associations by combining CNN and ELM

by Chen, Z.-H, Guo, Z.-H, Wang, M.-N, Wang, Y.-B, Yi, H.-C, You, Z.-H
Published 2021

Reconstructing contact network structure and cross-immunity patterns from multiple infection histories

by Alizon, S., Selinger, C.
Published 2021

Identifying the sequence specificities of circRNA-binding proteins based on a capsule network architecture

by Lei, X., Wang, Z.
Published 2021

Assessment of software methods for estimating protein-protein relative binding affinities

by Barnes, J.E, Gonzalez, T.R, Martin, K.P, Patel, J.S, Ytreberg, F.M
Published 2021

Drug-induced resistance evolution necessitates less aggressive treatment

by Beerenwinkel, N., Cairns, J., Kuosmanen, T., Mononen, T., Mustonen, V., Noble, R.
Published 2021

BiGAN: LncRNA-disease association prediction based on bidirectional generative adversarial network

by Li, X., Yang, Q.
Published 2021