Single cell biology—a Keystone Symposia report

by Alon, U., Arbel-Goren, R., Arekatla, G., Balzer, M.S, Cable, J., Cai, L., Domingos, A.I, Elowitz, M.B, Fan, J., Gaiti, F., Galloway, K.E, Garcia, H.G, Greenwald, N.F, Guilliams, M., Habib, N., Hamel, R., Hamidzada, H., Hong, C.K.Y, Itzkovitz, S., Junker, J.P, Keren, L., Klein, A.M, Liberali, P., Morris, S.A, Murray, J.I, Pfau, S.J, Quake, S.R, Raj, A., Ratz, M., Romeike, M., Rulands, S., Santos, S.D.M, Shalek, A.K, Spencer, S.L, Stergachis, A.B, Streets, A., Trapnell, C., Vento-Tormo, R., Wang, B., Whited, J., Yanai, I., Zhang, N.R
Published 2021

Biological Analysis of Simvastatin-releasing Chitosan Scaffold as a Cell-free System for Pulp-dentin Regeneration

by Anovazzi, G., Basso, F.G, Bordini, E.A.F, de Souza Costa, C.A, Hebling, J., Silva Leite, M.L.A, Soares, D.G, Zuta, U.O
Published 2018

Programming cell growth into different cluster shapes using diffusible signals

by Brenner, M.P, Guo, Y., Nitzan, M.
Published 2021

Integrative computational approach identifies drug targets in CD4+ T-cell-mediated immune disorders

by Amin, R., Barberis, M., Bennett, S.J, Ciurej, A., Helikar, T., Lichter, B., Moore, R., Puniya, B.L, Shah, A.R
Published 2021

A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC

by Bennett, J., Peters, B., Pomaznoy, M., Singhania, A.
Published 2021

A biochemically-realisable relational model of the self-manufacturing cell

by Hofmeyr, J.-H.S
Published 2021

Critical physicochemical and biological attributes of nanoemulsions for pulmonary delivery of rifampicin by nebulization technique in tuberculosis treatment

by Chan, L.W, Shah, K., Wong, T.W
Published 2017

DeepCellState: An autoencoder-based framework for predicting cell type specific transcriptional states induced by drug treatment

by Arner, E., Li, Y., Umarov, R.
Published 2021

RgCop-A regularized copula based method for gene selection in single cell rna-seq data

by Bandyopadhyay, S., Lall, S., Ray, S.
Published 2021

The suitability of micronuclei as markers of relative biological effect

by Burnet, N.G, Chadwick, A.L, Heaven, C.J, Henthorn, N.T, Honeychurch, J., Ingram, S.P, Kirkby, K.J, Kirkby, N.F, Merchant, M.J, Santina, E., Schmidt, C.K, Wanstall, H.C, Warmenhoven, J.-W
Published 2022

Optimal transport analysis reveals trajectories in steady-state systems

by Afanassiev, A., Greenstreet, L., Matsumoto, T., Schiebinger, G., Zhang, S.
Published 2021

Sparsely-connected autoencoder (SCA) for single cell RNAseq data mining

by Alessandri, L., Arigoni, M., Beccuti, M., Calogero, R., Cordero, F., Di Renzo, M.F, Licheri, N., Olivero, M., Sapino, A.
Published 2021

How the spleen reshapes and retains young and old red blood cells: A computational investigation

by Buffet, P., Karniadakis, G.E, Li, H., Liu, Z.L, Lu, L.
Published 2021

Sarc-Graph: Automated segmentation, tracking, and analysis of sarcomeres in hiPSCderived cardiomyocytes

by Chen, C.S, Lejeune, E., Zhang, K., Zhao, B.
Published 2021

Probing T-cell response by sequence-based probabilistic modeling

by Balachandran, V.P, Bravi, B., Cocco, S., Greenbaum, B.D, Monasson, R., Mora, T., Walczak, A.M
Published 2021

VANESA: An open-source hybrid functional Petri net modeling and simulation environment in systems biology

by Brinkrolf, C., Hofestädt, R., Ochel, L.
Published 2021

Studying the History of Tumor Evolution from Single-Cell Sequencing Data by Exploring the Space of Binary Matrices

by Azer, E.S, Ebrahimabadi, M.H, Malikić, S., Mehrabadi, F.R, Sahinalp, S.C
Published 2021

CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data

by Eroglu, A., Khetan, S., Stitzel, M.L, Tewhey, R., Thibodeau, A., Ucar, D.
Published 2021

Simpler and Faster Development of Tumor Phylogeny Pipelines

by Ali, S., Ciccolella, S., Lucarella, L., Patterson, M., Vedova, G.D
Published 2021

Integrated genetic and metabolic landscapes predict vulnerabilities of temozolomide resistant glioblastoma cells

by Ghanate, A.D, Immanuel, S.R.C, Panchagnula, V., Parmar, D.S, Raghunathan, A., Uthup, R., Yadav, R.
Published 2021