Integrated genetic and metabolic landscapes predict vulnerabilities of temozolomide resistant glioblastoma cells

by Ghanate, A.D, Immanuel, S.R.C, Panchagnula, V., Parmar, D.S, Raghunathan, A., Uthup, R., Yadav, R.
Published 2021

A systems biology model of junctional localization and downstream signaling of the Ang–Tie signaling pathway

by Annex, B.H, Kontos, C.D, Popel, A.S, Zhang, Y.
Published 2021

Generic self-stabilization mechanism for biomolecular adhesions under load

by Braeutigam, A., Gompper, G., Sabass, B., Simsek, A.N
Published 2022

A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC

by Bennett, J., Peters, B., Pomaznoy, M., Singhania, A.
Published 2021

Optimal transport analysis reveals trajectories in steady-state systems

by Afanassiev, A., Greenstreet, L., Matsumoto, T., Schiebinger, G., Zhang, S.
Published 2021

Differential contribution to gene expression prediction of histone modifications at enhancers or promoters

by Ballaré, C., Beringer, M., Blanco, E., Di Croce, L., González-Ramírez, M., Mugianesi, F., Santanach, A.
Published 2021

A highly multiplexed quantitative phosphosite assay for biology and preclinical studies

by Babur, O., Burgess, M., Carr, S.A, Forestier, D., Gillette, M.A, Golji, J., Jane-Valbuena, J., Jean Beltran, P.M, Keshishian, H., Krug, K., Kuhn, E., MacMullan, M.A, Mani, D.R, Marlow, S.E, McDonald, E.R., III, Melanson, R., Mundt, F., Olive, M.E, Porter, D.A, Rabasha, B., Rejtar, T., Robinson, M.L, Satpathy, S., Sellers, W.R, Specht, H., Todres, E., Wallace, L., Wang, K.
Published 2021

Comparative Analysis of T-Cell Spatial Proteomics and the Influence of HIV Expression

by Gonzalez, D.J, Guatelli, J., Krogan, N.J, Lewinski, M.K, Oom, A.L, Richards, A., Shams-Ud-Doha, K., Stoneham, C.A, Wozniak, J.M
Published 2022

Constructing gene regulatory networks using epigenetic data

by DeMeo, D.L, Glass, K., Quackenbush, J., Sonawane, A.R
Published 2021

The importance of biofilm formation for cultivation of a Micrarchaeon and its interactions with its Thermoplasmatales host

by Bharat, T.A.M, Bunk, B., Dombrowski, N., Gescher, J., Gfrerer, S., Hiller, K., Krause, S., Kuhlicke, U., Neu, T.R, Rachel, R., Reuse, C., Schmidt-Hohagen, K., Spang, A., Spröer, C., Villanueva, L., von Kügelgen, A.
Published 2022

Regulation of transcription reactivation dynamics exiting mitosis

by Molina, N., Riba, A., Sarnataro, S.
Published 2021

LuminoCell: a versatile and affordable platform for real-time monitoring of luciferase-based reporters

by Bárta, T., Bryja, V., Čechová, T., Celiker, C., Fafílek, B., Hampl, A., Krejčí, P., Macháčková, P., Radaszkiewicz, T., Šebestíková, J., Weissová, K.
Published 2022

DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks

by Birchler, J.A, Chen, C., Cheng, J., Hou, J., Shi, X., Yang, H.
Published 2021

Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells

by Glover, G., Heesom, K., Invergo, B.M, Łapińska, U., Milner, D.S, Moore, K., Nikolic, N., O’Neill, P., Pagliara, S., Petrov, P.G, Richards, T.A, Roy, S., Soanes, D., Tsaneva-Atanasova, K., Voliotis, M.
Published 2022

An iteration model for identifying essential proteins by combining comprehensive PPI network with biological information

by Chen, Z., Li, S., Li, X., Tan, Y., Wang, L., Zhang, Z.
Published 2021

Quantitative model of eukaryotic Cdk control through the Forkhead CONTROLLER

by Barberis, M.
Published 2021

Integrative analysis of hub genes and key pathway in two subtypes of diffuse large B-cell lymphoma by bioinformatics and basic experiments

by Charwudzi, A., Hu, L., Li, Q., Meng, Y., Zhai, Z., Zhu, W.
Published 2021

Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types

by Chen, J., Harigaya, Y., Hu, M., Lagler, T.M, Li, Y., Raffield, L.M, Reiner, A.P, Sankaran, V.G, Sun, Q., Wen, J., Yang, Y.
Published 2022

A spatio-temporal model to reveal oscillator phenotypes in molecular clocks: Parameter estimation elucidates circadian gene transcription dynamics in single-cells

by Brancaccio, M., Finkenstädt, B., Hastings, M., Johansen, A.M, Unosson, M.
Published 2021

Crosstalk between Plk1, p53, cell cycle, and G2/M DNA damage checkpoint regulation in cancer: computational modeling and analysis

by Dash, R.K, Jung, Y., Kraikivski, P., Shafiekhani, S., Terhune, S.S
Published 2021