A functional analysis of omic network embedding spaces reveals key altered functions in cancer

by Ceddia, G., Doria-Belenguer, S., Malod-Dognin, N., Pržulj, N., Xenos, A.
Published 2023

MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes

by Conrad, R.E, Konstantinidis, K.T, Ruiz-Perez, C.A
Published 2021

bootRanges: flexible generation of null sets of genomic ranges for hypothesis testing

by Davis, E.S, Dozmorov, M.G, Lee, S., Love, M.I, Mu, W., Phanstiel, D.H
Published 2023

HapSolo: an optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding

by Gaut, B.S, Long, A.D, Solares, E.A, Tao, Y.
Published 2021

Scale-Free Spanning Trees and Their Application in Genomic Epidemiology

by Kaibel, V., Kukharenko, K., Orlovich, Y., Skums, P.
Published 2021

Untangling the genomics of noise-induced hearing loss and tinnitus: Contributions of Mus musculus and Homo sapiens

by Clifford, R.E, Hertzano, R., Ohlemiller, K.K
Published 2019

Genome-scale CRISPR screens identify host factors that promote human coronavirus infection

by Bluhm, A.P, Grodzki, M., Karst, S.M, Norris, M.H, Rafiee, R., Russo, M., Schaefer, M., Sobh, A., Tagmount, A., Vulpe, C.D
Published 2022

Functional characterisation of the amyotrophic lateral sclerosis risk locus GPX3/TNIP1

by Bye, C.R, Cheng, F.-F, Garton, F.C, Giacomotto, J., Gusev, A., Henders, A.K, Henderson, R.D, Kabashi, E., Kiernan, M.C, Mathers, S., McCombe, P.A, McRae, A.F, Nabais, M.F, Needham, M., Ngo, S.T, Ophoff, R., Qi, T., Restuadi, R., Schultz, D., Steyn, F.J, Thompson, M.J, Turner, B.J, van den Berg, L.H, van Rheenen, W., Veldink, J.H, Wallace, L., Wray, N.R, Wu, Y., Zaitlen, N., Ziser, L.
Published 2022

Whole Genome Sequence Analysis of the Plasma Proteome in Black Adults Provides Novel Insights Into Cardiovascular Disease

by Benson, M.D, Bick, A.G, Bouchard, C., Chen, Z.-Z, Correa, A., Cruz, D.E, Deng, S., Durda, P., Farrell, L., Gao, Y., Gerszten, R.E, Guo, X., Hall, M.E, Ida Chen, Y.-D, Jain, D., Johnson, W.C, Katz, D.H, Liu, Y., Manichaikul, A.W, Natarajan, P., National Heart, Lung, and Blood Institute TOPMed (Trans-Omics for Precision Medicine) Consortium, Ngo, D., Pampana, A., Rich, S.S, Robbins, J.M, Rotter, J.I, Sarzynski, M.A, Schmaier, A.A, Shen, D., Sinha, S., Tahir, U.A, Taylor, K.D, Tracy, R.P, Wang, T.J, Wilson, J.G, Yao, J., Yu, Z.
Published 2022

XSim version 2: simulation of modern breeding programs

by Chen, C.J, Cheng, H., Fernando, R., Garrick, D., Karaman, E., Keehan, M., Stricker, C.
Published 2022

Engineering gene overlaps to sustain genetic constructs in vivo

by Bernheim, A., Decrulle, A.L, Frénoy, A., Gutierrez, A., Lindner, A.B, Lotton, C., Meiller-Legrand, T.A
Published 2021

Vital insights into prokaryotic genome compaction by nucleoid-associated protein (NAP) and illustration of DNA flexure angles at single-molecule resolution

by Bandyopadhyay, D., Mishra, P.P, Purkait, D.
Published 2021

Functional precision oncology: Testing tumors with drugs to identify vulnerabilities and novel combinations

by Bhola, P., Letai, A., Welm, A.L
Published 2022

Reanalysis of eMERGE phase III sequence variants in 10,500 participants and infrastructure to support the automated return of knowledge updates

by Harley, J.B, Hawley, M., Jarvik, G.P, Karlson, E.W, Koch, C., Lebo, M.S, Leppig, K.A, Mahanta, L.M, Myers, M.F, Oza, A., Prows, C.A, Rehm, H.L, Vijay Kumar, P.K, Weiss, S.T, Williams, M.S, Yu, W., Zouk, H.
Published 2022

Overcoming constraints on the detection of recessive selection in human genes from population frequency data

by Balick, D.J, Do, R., Jordan, D.M, Sunyaev, S.
Published 2022

lncEvo: automated identification and conservation study of long noncoding RNAs

by Bryzghalov, O., Makałowska, I., Szcześniak, M.W
Published 2021

mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes

by Planz, J., Song, B., Woerner, A.E
Published 2021

Multilocus sequence typing analysis and second-generation sequencing analysis of Salmonella Wandsworth

by Lu, Y., Wang, Y., Xu, X., Zhang, C.
Published 2021

RNA editing regulates lncRNA splicing in human early embryo development

by Ma, X., Qiu, J., Yan, J., Zeng, F.
Published 2021

Super-variants identification for brain connectivity

by Hu, J., Li, T., Wang, S., Zhang, H.
Published 2021