Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization

by Albertin, C.B, Bates, P.A, Clarence, T., Foster, J.S, Fu, X., Hoang, O.P, Kawaguchi, A., Nyholm, S.V, Ritschard, E.A, Schmidbaur, H., Simakov, O., Tanaka, E., Weissenbacher, A., Zimmermann, B.
Published 2022

STAG2 regulates interferon signaling in melanoma via enhancer loop reprogramming

by Boland, G.M, Cai, L., Chen, J., Chu, Z., Feng, A., Flaherty, K.T, Frederick, D.T, Geng, S., Georgopoulos, K., Gu, L., Hu, Y., Huang, M., Li, M., Liu, D., Niu, Z., Piris, A., Qi, Y., Shen, C.-H, Shi, Y., Specht, E., Sullivan, R.J, Teng, D., Yoshida, T., Zhang, X., Zheng, B.
Published 2022

The regulatory pattern of target gene expression by aberrant enhancer methylation in glioblastoma

by Ji, J., Li, D., Wang, R., Wang, S., Yu, Q., Zhao, X.
Published 2021

Gene co-expression in the interactome: moving from correlation toward causation via an integrated approach to disease module discovery

by Conte, F., Farina, L., Fiscon, G., Loscalzo, J., Paci, P., Wang, R.-S
Published 2021

Transcriptome analysis revealed the regulation of gibberellin and the establishment...

by Feng, G., Huang, L., Khan, I., Li, Z., Lin, C., Nie, G., Peng, Y., Sun, M., Wang, X., Wu, B., Yan, Y., Yang, D., Zhang, H., Zhang, X.
Published 2021

DNA methylation-based classifier and gene expression signatures detect BRCAness in osteosarcoma

by Ameline, B., Barenboim, M., Baumhoer, D., Bielack, S., Burdach, S., Jones, D.T.W, Kovac, M., Nathrath, M., Witt, O.
Published 2021

Brain-derived neurotrophic factor predominantly regulates the expression of synapse-related genes in the striatum: Insights from in vitro transcriptomics

by Adachi, N., Kawai, A., Koshimizu, H., Matsuoka, H., Miki, T., Nakajima, Y., Ohta, K.-I, Ono, J., Sunagawa, M., Suzuki, S.
Published 2021

Differential expression of starch and sucrose metabolic genes linked to varying biomass yield in Miscanthus hybrids

by De Vega, J.J, Donnison, L., Dyer, S., Farrar, K., Hawkins, S., Peel, N., Purdy, S.J
Published 2021

Regulation of transcription reactivation dynamics exiting mitosis

by Molina, N., Riba, A., Sarnataro, S.
Published 2021

Alkaline nucleoplasm facilitates contractile gene expression in the mammalian heart

by Andreev, O.A, Carr, C.A, Chung, Y.J, Crump, N.T, Curtis, M.K, Fournier, M., Gunadasa-Rohling, M., Hulikova, A., Loonat, A.A, Milne, T.A, Moshnikova, A., Park, K.C, Reshetnyak, Y.K, Riley, P.R, Smart, N., Swietach, P., Trafford, A.W, Wilson, A.
Published 2022

Inference of phenotype-relevant transcriptional regulatory networks elucidates cancer type-specific regulatory mechanisms in a pan-cancer study

by Emad, A., Sinha, S.
Published 2021

Dynamic assessing silica particle-induced pulmonary fibrosis and associated regulation of long non-coding RNA expression in Wistar rats

by Jia, Q., Peng, C., Qi, X., Sai, L., Yu, G., Zhang, J., Zheng, Y.
Published 2021

A data-driven approach for constructing mutation categories for mutational signature analysis

by Gilad, G., Leiserson, M.D.M, Sharan, R.
Published 2021

Distinct Hepatic Gene-Expression Patterns of NAFLD in Patients With Obesity

by Bartsch, L.M, Bhatia, S.N, Bredella, M.A, Chung, R.T, Corey, K.E, Dichtel, L.E, Drescher, H.K, Gee, D.W, Gelrud, L., Gustafson, J.L, Hutter, M.M, Lauer, G.M, Masia, R., Meireles, O.R, Miller, K.K, Osganian, S.A, Rwema, S., Subudhi, S., Warren, A., Witkowski, E.R
Published 2022

ComHub: Community predictions of hubs in gene regulatory networks

by Åkesson, J., Gustafsson, M., Lubovac-Pilav, Z., Magnusson, R.
Published 2021

Chromosomal neighbourhoods allow identification of organ specific changes in gene expression

by Christensen, M.M, Hallikas, O., Jernvall, J., Renvoisé, E., Roy, R.D
Published 2021

Effects of m6A RNA methylation regulators on endometrial cancer

by Yang, Y., Zhang, Y.
Published 2021

Genome-Wide Analysis of the Expansin Gene Family in Populus and Characterization of Expression...

by Chen, Y., Wu, H., Yin, T., Yin, Z., Zhou, F.
Published 2023

GECO: gene expression clustering optimization app for non-linear data visualization of patterns

by Habowski, A.N, Habowski, T.J, Waterman, M.L
Published 2021

Genome-wide identification of CK gene family suggests functional expression pattern against Cd2+ stress in Gossypium hirsutum L.

by Chen, C., Chen, X., Fan, Y., Guo, L., Han, M., Lu, X., Malik, W.A, Rui, C., Sun, L., Wang, D., Wang, J., Wang, J., Wang, Q., Wang, S., Xu, N., Ye, W., Zhang, H., Zhang, Y., Zhao, L.
Published 2021