Algorithms Humans 2 algorithm 2 human 2 Alignment 1 Amino Acid Sequence 1 Article 1 Autophagy 1 Biochemical Phenomena 1 Coevolution 1 Computational Biology 1 Computational bottlenecks 1 Computer Graphics 1 Computer Simulation 1 Couplings 1 Direct coupling analysis 1 Functional annotation 1 Hidden Markov models 1 Homology 1 Integer linear programming 1 Integer linear programming formulation 1 Integer programming 1 Mathematical Concepts 1 Metabolic Networks and Pathways 1 Models, Biological 1 Optimal alignments 1 Pairwise alignment 1 Pairwise sequence alignment 1 Potts model 1 Profile hidden Markov model 1