Metabolic limits on classical information processing by biological cells

by Fields, C., Levin, M.
Published 2021

DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification

by Armenoult, L., Arnaud, A., Ayadi, M., Baurès, A., Blum, Y., Cros, J., de Reyniès, A., Decamps, C., Escalera, S., Guyon, I., HADACA consortium, Nicolle, R., Petitprez, F., Richard, M., Tomasini, R.
Published 2021

KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases

by Byrne, D.P, Eyers, P.A, Gravel, N., Huang, L.-C, Kannan, N., Taujale, R., Venkat, A., Yeung, W.
Published 2021

A computational framework for modeling cell–matrix interactions in soft biological tissues

by Aydin, R.C, Cyron, C.J, Eichinger, J.F, Grill, M.J, Humphrey, J.D, Kermani, I.D, Wall, W.A
Published 2021

Transcriptomic profiling in canines and humans reveals cancer specific gene modules and biological mechanisms common to both species

by Braisted, J., Breen, M., Gerhold, D., Grewal, G., LeBlanc, A.K, Mazcko, C., Sittampalam, G., Tawa, G.J
Published 2021

Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?

by Diaz-Colunga, J., Diaz-Uriarte, R.
Published 2021

A highly multiplexed quantitative phosphosite assay for biology and preclinical studies

by Babur, O., Burgess, M., Carr, S.A, Forestier, D., Gillette, M.A, Golji, J., Jane-Valbuena, J., Jean Beltran, P.M, Keshishian, H., Krug, K., Kuhn, E., MacMullan, M.A, Mani, D.R, Marlow, S.E, McDonald, E.R., III, Melanson, R., Mundt, F., Olive, M.E, Porter, D.A, Rabasha, B., Rejtar, T., Robinson, M.L, Satpathy, S., Sellers, W.R, Specht, H., Todres, E., Wallace, L., Wang, K.
Published 2021

Automatic consistency assurance for literature-based gene ontology annotation

by Chen, J., Geard, N., Verspoor, K., Zobel, J.
Published 2021

Polymorphisms of potential drug resistant molecular markers in Plasmodium vivax from China–Myanmar border during 2008‒2017

by Chen, Q., Ji, X., Pan, Y., Wang, H., Wang, Z., Wang, Z., Wang, Z., Wei, C., Zhang, L.
Published 2022

Using predictive machine learning models for drug response simulation by calibrating patient-specific pathway signatures

by Bharadhwaj, V.S, Domingo-Fernández, D., Golriz Khatami, S., Hofmann-Apitius, M., Kodamullil, A.T, Mubeen, S.
Published 2021

A systems genomics approach uncovers molecular associates of RSV severity

by Benoodt, L., Caserta, M.T, Chu, C.-Y, Corbett, A., Falsey, A.R, Gill, S.R, Grier, A., Holden-Wiltse, J., Mariani, T.J, McCall, M.N, Qiu, X., Slaunwhite, C., Thakar, J., Topham, D.J, Walsh, E.E, Wang, L.
Published 2021

PIGNON: a protein–protein interaction-guided functional enrichment analysis for quantitative proteomics

by Byvsheva, A., Lavallée-Adam, M., Nadeau, R.
Published 2021

Alternative tissue fixation for combined histopathological and molecular analysis in a clinically representative setting

by Ashton-Key, M., Flanagan, A., Gerrard, G., Guppy, N., Hair, J., Lees, R., Meecham, A., Miranda, E., Mooney, D., Morris, H.T, Oien, K.A, Rodriguez-Justo, M., Shaw, E.C
Published 2021

MultiCens: Multilayer network centrality measures to uncover molecular mediators of tissue-tissue communication

by Kumar, T., Mitra, S., Narayanan, M., Ravindran, B., Sethuraman, R.
Published 2023

Super.FELT: supervised feature extraction learning using triplet loss for drug response prediction with multi-omics data

by Lee, H., Park, S., Soh, J.
Published 2021

MeltingPlot, a user-friendly online tool for epidemiological investigation using High Resolution Melting data

by Batisti Biffignandi, G., Comandatore, F., Di Carlo, D., Panelli, S., Pasala, A.R, Perini, M., Piazza, A., Zuccotti, G.V
Published 2021

Establishing a consensus for the hallmarks of cancer based on gene ontology and pathway annotations

by Chen, Y., Verbeek, F.J, Wolstencroft, K.
Published 2021

Identification of the active substances and mechanisms of ginger for the treatment of colon cancer based on network pharmacology and molecular docking

by Ai, L., He, L., Lu, F., Wang, D., Wu, C.-J, Ye, X., Zhang, M.-M, Zhao, R.
Published 2021

Novel combinations of experimental and computational analysis tested on the binding of metalloprotoporphyrins to albumin

by Brancaleon, L., Demeler, B., Hernandez Soraiz, E., Hu, J., Johnson, C.N
Published 2019

Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies

by Becker, E., Dameron, O., Gondret, F., Juigné, C., Moreews, F.
Published 2023