Dramatic increases of soil microbial functional gene diversity at the treeline ecotone of Changbai Mountain

by Congcong Shen, Yu Shi, Yingying Ni, Ye Deng, Joy Van Nostrand, Zhili He, Jizhong Zhou, Haiyan Chu
Published 2016-07-01

Correspondence: Reply to ‘Analytical flaws in a continental-scale forest soil microbial diversity study’

by Jizhong Zhou, Ye Deng, Lina Shen, Chongqing Wen, Qingyun Yan, Daliang Ning, Yujia Qin, Kai Xue, Liyou Wu, Zhili He, James W. Voordeckers, Joy D. Van Nostrand, Vanessa Buzzard, Sean T. Michaletz, Brian J. Enquist, Michael D. Weiser, Michael Kaspari, Robert Waide, Yunfeng Yang, James H. Brown
Published 2017-06-01

GeoChip as a metagenomics tool to analyze the microbial gene diversity along an elevation gradient

by Ying Gao, Shiping Wang, Depeng Xu, Hao Yu, Linwei Wu, Qiaoyan Lin, Yigang Hu, Xiangzhen Li, Zhili He, Ye Deng, Jizhong Zhou, Yunfeng Yang
Published 2014-12-01

Analyses of the influencing factors of soil microbial functional gene diversity in tropical rainforest based on GeoChip 5.0

by Jing Cong, Xueduan Liu, Hui Lu, Han Xu, Yide Li, Ye Deng, Diqiang Li, Yuguang Zhang
Published 2015-09-01

Relative Importance of Deterministic and Stochastic Processes on Soil Microbial Community Assembly in Temperate Grasslands

by Nana Liu, Huifeng Hu, Wenhong Ma, Ye Deng, Qinggang Wang, Ao Luo, Jiahui Meng, Xiaojuan Feng, Zhiheng Wang
Published 2021-09-01

Responses of Microbial Communities and Interaction Networks to Different Management Practices in Tea Plantation Soils

by Lin Tan, Songsong Gu, Shi Li, Zuohua Ren, Ye Deng, Zhonghua Liu, Zhihua Gong, Wenjun Xiao, Qiulong Hu
Published 2019-08-01

Effects of graphene oxide on PCR amplification for microbial community survey

by Shuzhen Li, Zhujun Wang, Yuanyuan Wang, Maoyong Song, Guangxin Lu, Ning Dang, Huaqun Yin, Yuanyuan Qu, Ye Deng
Published 2020-09-01

The Lifestyle-Dependent Microbial Interactions Vary Between Upstream and Downstream of the Three Gorges Dam

by Shang Wang, Weiguo Hou, Hongchen Jiang, Hailiang Dong, Liuqin Huang, Shu Chen, Bin Wang, Yongcan Chen, Binliang Lin, Ye Deng
Published 2021-05-01

Temperature mediates continental-scale diversity of microbes in forest soils

by Jizhong Zhou, Ye Deng, Lina Shen, Chongqing Wen, Qingyun Yan, Daliang Ning, Yujia Qin, Kai Xue, Liyou Wu, Zhili He, James W. Voordeckers, Joy D. Van Nostrand, Vanessa Buzzard, Sean T. Michaletz, Brian J. Enquist, Michael D. Weiser, Michael Kaspari, Robert Waide, Yunfeng Yang, James H. Brown
Published 2016-07-01

Soil Microbial Community Assembly and Interactions Are Constrained by Nitrogen and Phosphorus in Broadleaf Forests of Southern China

by Mengxin Zhao, Jing Cong, Jingmin Cheng, Qi Qi, Yuyu Sheng, Daliang Ning, Hui Lu, Kristen N Wyckoff, Ye Deng, Diqiang Li, Jizhong Zhou, Yuguang Zhang
Published 2020-02-01

Contrasting Biogeographic Patterns of Bacterial and Archaeal Diversity in the Top- and Subsoils of Temperate Grasslands

by Nana Liu, Huifeng Hu, Wenhong Ma, Ye Deng, Yuqing Liu, Baihui Hao, Xinying Zhang, Dimitar Dimitrov, Xiaojuan Feng, Zhiheng Wang
Published 2019-10-01

Exploration of Intrinsic Microbial Community Modulators in the Rice Endosphere Indicates a Key Role of Distinct Bacterial Taxa Across Different Cultivars

by Pei Wang, Pei Wang, Xiao Kong, Xiao Kong, Hongsong Chen, Youlun Xiao, Huijun Liu, Xiaojuan Li, Zhuo Zhang, Zhuo Zhang, Xinqiu Tan, Diandong Wang, Decai Jin, Decai Jin, Ye Deng, Ye Deng, Tomislav Cernava
Published 2021-02-01

Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR

by Huayu Qin, Shang Wang, Kai Feng, Zhili He, Marko P. J. Virta, Weiguo Hou, Hailiang Dong, Ye Deng
Published 2019-05-01

Assembly Patterns of the Rhizosphere Microbiome Along the Longitudinal Root Axis of Maize (Zea mays L.)

by Lioba Rüger, Kai Feng, Kai Feng, Kenneth Dumack, Jule Freudenthal, Yan Chen, Ruibo Sun, Monica Wilson, Peng Yu, Bo Sun, Ye Deng, Ye Deng, Frank Hochholdinger, Doris Vetterlein, Doris Vetterlein, Michael Bonkowski
Published 2021-02-01

Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy...

by Ren Bai, Jun-Tao Wang, Ye Deng, Ye Deng, Ji-Zheng He, Ji-Zheng He, Kai Feng, Kai Feng, Li-Mei Zhang, Li-Mei Zhang
Published 2017-05-01

Development of HuMiChip for functional profiling of human microbiomes.

by Qichao Tu, Zhili He, Yan Li, Yanfei Chen, Ye Deng, Lu Lin, Christopher L Hemme, Tong Yuan, Joy D Van Nostrand, Liyou Wu, Xuedong Zhou, Wenyuan Shi, Lanjuan Li, Jian Xu, Jizhong Zhou
Published 2014-01-01

Saliva microbiota carry caries-specific functional gene signatures.

by Fang Yang, Kang Ning, Xingzhi Chang, Xiao Yuan, Qichao Tu, Tong Yuan, Ye Deng, Christopher L Hemme, Joy Van Nostrand, Xinping Cui, Zhili He, Zhenggang Chen, Dawei Guo, Jiangbo Yu, Yue Zhang, Jizhong Zhou, Jian Xu
Published 2014-01-01

Pollution Gradients Altered the Bacterial Community Composition and Stochastic Process of Rural Polluted Ponds

by Xin Tai, Rui Li, Bao Zhang, Hao Yu, Xiao Kong, Zhihui Bai, Ye Deng, Lan Jia, Decai Jin
Published 2020-02-01

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform.

by Chongqing Wen, Liyou Wu, Yujia Qin, Joy D Van Nostrand, Daliang Ning, Bo Sun, Kai Xue, Feifei Liu, Ye Deng, Yuting Liang, Jizhong Zhou
Published 2017-01-01

ARDEP, a Rapid Degenerate Primer Design Pipeline Based on <i>k</i>-mers for Amplicon Microbiome Studies

by Yueni Wu, Kai Feng, Ziyan Wei, Zhujun Wang, Ye Deng
Published 2020-08-01