Search Results - Andrei Zinovyev

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  1. 1

    Lizard Brain: Tackling Locally Low-Dimensional Yet Globally Complex Organization of Multi-Dimensional Datasets by Jonathan Bac, Jonathan Bac, Jonathan Bac, Jonathan Bac, Andrei Zinovyev, Andrei Zinovyev, Andrei Zinovyev, Andrei Zinovyev

    Published in Frontiers in Neurorobotics (2020-01-01)
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  2. 2

    Minimum Spanning vs. Principal Trees for Structured Approximations of Multi-Dimensional Datasets by Alexander Chervov, Jonathan Bac, Andrei Zinovyev

    Published in Entropy (2020-11-01)
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  3. 3

    Meta-Analysis of Esophageal Cancer Transcriptomes Using Independent Component Analysis by Ainur Ashenova, Ainur Ashenova, Asset Daniyarov, Askhat Molkenov, Aigul Sharip, Andrei Zinovyev, Andrei Zinovyev, Ulykbek Kairov

    Published in Frontiers in Genetics (2021-10-01)
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  4. 4

    Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial) by Nicolas Levy, Nicolas Levy, Aurélien Naldi, Céline Hernandez, Gautier Stoll, Gautier Stoll, Gautier Stoll, Gautier Stoll, Gautier Stoll, Denis Thieffry, Andrei Zinovyev, Andrei Zinovyev, Andrei Zinovyev, Andrei Zinovyev, Laurence Calzone, Laurence Calzone, Laurence Calzone, Loïc Paulevé

    Published in Frontiers in Physiology (2018-07-01)
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  5. 5

    scEvoNet: a gradient boosting-based method for prediction of cell state evolution by Aleksandr Kotov, Andrei Zinovyev, Anne-Helene Monsoro-Burq

    Published in BMC Bioinformatics (2023-03-01)
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  6. 6

    scBoolSeq: Linking scRNA-seq statistics and Boolean dynamics. by Gustavo Magaña-López, Laurence Calzone, Andrei Zinovyev, Loïc Paulevé

    Published in PLoS Computational Biology (2024-07-01)
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  7. 7

    Omics data integration in computational biology viewed through the prism of machine learning paradigms by Aziz Fouché, Aziz Fouché, Aziz Fouché, Aziz Fouché, Andrei Zinovyev

    Published in Frontiers in Bioinformatics (2023-08-01)
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  8. 8

    A comprehensive modular map of molecular interactions in RB/E2F pathway by Laurence Calzone, Amélie Gelay, Andrei Zinovyev, François Radvanyi, Emmanuel Barillot

    Published in Molecular Systems Biology (2008-03-01)
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  9. 9

    Scikit-Dimension: A Python Package for Intrinsic Dimension Estimation by Jonathan Bac, Evgeny M. Mirkes, Alexander N. Gorban, Ivan Tyukin, Andrei Zinovyev

    Published in Entropy (2021-10-01)
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  10. 10

    Domain Adaptation Principal Component Analysis: Base Linear Method for Learning with Out-of-Distribution Data by Evgeny M. Mirkes, Jonathan Bac, Aziz Fouché, Sergey V. Stasenko, Andrei Zinovyev, Alexander N. Gorban

    Published in Entropy (2022-12-01)
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  11. 11

    Antagonism pattern detection between microRNA and target expression in Ewing's sarcoma. by Loredana Martignetti, Karine Laud-Duval, Franck Tirode, Gaelle Pierron, Stéphanie Reynaud, Emmanuel Barillot, Olivier Delattre, Andrei Zinovyev

    Published in PLoS ONE (2012-01-01)
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  12. 12

    Representation and quantification of module activity from omics data with rROMA by Matthieu Najm, Matthieu Cornet, Luca Albergante, Andrei Zinovyev, Isabelle Sermet-Gaudelus, Véronique Stoven, Laurence Calzone, Loredana Martignetti

    Published in npj Systems Biology and Applications (2024-01-01)
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  13. 13

    A multiscale signalling network map of innate immune response in cancer reveals cell heterogeneity signatures by Maria Kondratova, Urszula Czerwinska, Nicolas Sompairac, Sebastian D. Amigorena, Vassili Soumelis, Emmanuel Barillot, Andrei Zinovyev, Inna Kuperstein

    Published in Nature Communications (2019-10-01)
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  14. 14

    Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph by Luca Albergante, Evgeny Mirkes, Jonathan Bac, Huidong Chen, Alexis Martin, Louis Faure, Emmanuel Barillot, Luca Pinello, Alexander Gorban, Andrei Zinovyev

    Published in Entropy (2020-03-01)
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  15. 15

    Data-driven inference of Boolean networks from transcriptomes to predict cellular differentiation and reprogramming by Stéphanie Chevalier, Julia Becker, Yujuan Gui, Vincent Noël, Cui Su, Sascha Jung, Laurence Calzone, Andrei Zinovyev, Antonio del Sol, Jun Pang, Lasse Sinkkonen, Thomas Sauter, Loïc Paulevé

    Published in npj Systems Biology and Applications (2025-09-01)
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  16. 16

    Integration of clinical, pathological, radiological, and transcriptomic data improves prediction for first-line immunotherapy outcome in metastatic non-small cell lung cancer by Nicolas Captier, Marvin Lerousseau, Fanny Orlhac, Narinée Hovhannisyan-Baghdasarian, Marie Luporsi, Erwin Woff, Sarah Lagha, Paulette Salamoun Feghali, Christine Lonjou, Clément Beaulaton, Andrei Zinovyev, Hélène Salmon, Thomas Walter, Irène Buvat, Nicolas Girard, Emmanuel Barillot

    Published in Nature Communications (2025-01-01)
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  17. 17

    Transcriptome profiling and analysis of patients with esophageal squamous cell carcinoma from Kazakhstan by Aigul Sharip, Saule Rakhimova, Askhat Molkenov, Ainur Ashenova, Ulan Kozhamkulov, Ilyas Akhmetollayev, Andrei Zinovyev, Yuri Zhukov, Marat Omarov, Mukhtar Tuleutaev, Venera Rakhmetova, Joseph D. Terwilliger, Joseph D. Terwilliger, Joseph D. Terwilliger, Joseph H. Lee, Joseph H. Lee, Zhaxybay Zhumadilov, Zhaxybay Zhumadilov, Ainur Akilzhanova, Ulykbek Kairov

    Published in Frontiers in Genetics (2024-03-01)
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  18. 18

    Author Correction: Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms by Alexander Mazein, Marek Ostaszewski, Inna Kuperstein, Steven Watterson, Nicolas Le Novère, Diane Lefaudeux, Bertrand De Meulder, Johann Pellet, Irina Balaur, Mansoor Saqi, Maria Manuela Nogueira, Feng Q. HeFeng, Andrew Parton, Nathanaël Lemonnier, Piotr Gawron, Stephan Gebel, Pierre Hainaut, Markus Ollert, Ugur Dogrusoz, Emmanuel Barillot, Andrei Zinovyev, Reinhard Schneider, Rudi Balling, Charles Auffray

    Published in npj Systems Biology and Applications (2025-07-01)
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  19. 19

    Immune digital twins for complex human pathologies: applications, limitations, and challenges by Anna Niarakis, Reinhard Laubenbacher, Gary An, Yaron Ilan, Jasmin Fisher, Åsmund Flobak, Kristin Reiche, María Rodríguez Martínez, Liesbet Geris, Luiz Ladeira, Lorenzo Veschini, Michael L. Blinov, Francesco Messina, Luis L. Fonseca, Sandra Ferreira, Arnau Montagud, Vincent Noël, Malvina Marku, Eirini Tsirvouli, Marcella M. Torres, Leonard A. Harris, T. J. Sego, Chase Cockrell, Amanda E. Shick, Hasan Balci, Albin Salazar, Kinza Rian, Ahmed Abdelmonem Hemedan, Marina Esteban-Medina, Bernard Staumont, Esteban Hernandez-Vargas, Shiny Martis B, Alejandro Madrid-Valiente, Panagiotis Karampelesis, Luis Sordo Vieira, Pradyumna Harlapur, Alexander Kulesza, Niloofar Nikaein, Winston Garira, Rahuman S. Malik Sheriff, Juilee Thakar, Van Du T. Tran, Jose Carbonell-Caballero, Soroush Safaei, Alfonso Valencia, Andrei Zinovyev, James A. Glazier

    Published in npj Systems Biology and Applications (2024-11-01)
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