検索結果 - Ben Langmead

A tandem simulation framework for predicting mapping quality 著者: Ben Langmead

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Mumemto: efficient maximal matching across pangenomes 著者: Vikram S. Shivakumar, Ben Langmead

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Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification 著者: Li Song, Ben Langmead

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DandD: Efficient measurement of sequence growth and similarity 著者: Jessica K. Bonnie, Omar Y. Ahmed, Ben Langmead

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Pangenomic genotyping with the marker array 著者: Taher Mun, Naga Sai Kavya Vaddadi, Ben Langmead

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REPAC: analysis of alternative polyadenylation from RNA-sequencing data 著者: Eddie L. Imada, Christopher Wilks, Ben Langmead, Luigi Marchionni

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Measuring, visualizing, and diagnosing reference bias with biastools 著者: Mao-Jan Lin, Sheila Iyer, Nae-Chyun Chen, Ben Langmead

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WGT: Tools and algorithms for recognizing, visualizing, and generating Wheeler graphs 著者: Kuan-Hao Chao, Pei-Wei Chen, Sanjit A. Seshia, Ben Langmead

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Movi: A fast and cache-efficient full-text pangenome index 著者: Mohsen Zakeri, Nathaniel K. Brown, Omar Y. Ahmed, Travis Gagie, Ben Langmead

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Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space 著者: Richard Wilton, Tamas Budavari, Ben Langmead, Sarah J. Wheelan, Steven L. Salzberg, Alexander S. Szalay

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Mem-based pangenome indexing for k-mer queries 著者: Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead

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Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn 著者: Anna-Maria Liebhoff, Thiagarajan Venkataraman, William R. Morgenlander, Miso Na, Tomasz Kula, Kathleen Waugh, Charles Morrison, Marian Rewers, Randy Longman, June Round, Stephen Elledge, Ingo Ruczinski, Ben Langmead, H. Benjamin Larman

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Large-scale RNA-Seq mining reveals ciclopirox olamine induces TDP-43 cryptic exons 著者: Irika R. Sinha, Parker S. Sandal, Holly Spence, Grace D. Burns, Aswathy Peethambaran Mallika, Fatemeh Abbasinejad, Katherine E. Irwin, Anna Lourdes F. Cruz, Vania Wang, Shaelyn R. Marx, Josué Llamas Rodríguez, Ben Langmead, Jenna M. Gregory, Philip C. Wong, Jonathan P. Ling

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Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data 著者: Caitlin Guccione, Lucas Patel, Yoshihiko Tomofuji, Daniel McDonald, Antonio Gonzalez, Gregory D. Sepich-Poore, Kyuto Sonehara, Mohsen Zakeri, Yang Chen, Amanda Hazel Dilmore, Neil Damle, Sergio E. Baranzini, George Hightower, Teruaki Nakatsuji, Richard L. Gallo, Ben Langmead, Yukinori Okada, Kit Curtius, Rob Knight

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Cell-specific regulation of gene expression using splicing-dependent frameshifting 著者: Jonathan P. Ling, Alexei M. Bygrave, Clayton P. Santiago, Rogger P. Carmen-Orozco, Vickie T. Trinh, Minzhong Yu, Yini Li, Ying Liu, Kyra D. Bowden, Leighton H. Duncan, Jeong Han, Kamil Taneja, Rochinelle Dongmo, Travis A. Babola, Patrick Parker, Lizhi Jiang, Patrick J. Leavey, Jennifer J. Smith, Rachel Vistein, Megan Y. Gimmen, Benjamin Dubner, Eric Helmenstine, Patric Teodorescu, Theodoros Karantanos, Gabriel Ghiaur, Patrick O. Kanold, Dwight Bergles, Ben Langmead, Shuying Sun, Kristina J. Nielsen, Neal Peachey, Mandeep S. Singh, W. Brian Dalton, Fatemeh Rajaii, Richard L. Huganir, Seth Blackshaw

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