Search Results - Ben Murrell

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  1. 1

    On the validity of evolutionary models with site-specific parameters. by Konrad Scheffler, Ben Murrell, Sergei L Kosakovsky Pond

    Published in PLoS ONE (2014-01-01)
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  2. 2

    Detecting individual sites subject to episodic diversifying selection. by Ben Murrell, Joel O Wertheim, Sasha Moola, Thomas Weighill, Konrad Scheffler, Sergei L Kosakovsky Pond

    Published in PLoS Genetics (2012-01-01)
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  3. 3

    Maintenance of caecal homeostasis by diverse adaptive immune cells in the rhesus macaque by Xaquin Castro Dopico, Mariia Guryleva, Marco Mandolesi, Martin Corcoran, Jonathan M Coquet, Ben Murrell, Gunilla B Karlsson Hedestam

    Published in Clinical & Translational Immunology (2024-01-01)
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  4. 4

    Picomolar SARS-CoV-2 Neutralization Using Multi-Arm PEG Nanobody Constructs by Ainhoa Moliner-Morro, Daniel J. Sheward, Vivien Karl, Laura Perez Vidakovics, Ben Murrell, Gerald M. McInerney, Leo Hanke

    Published in Biomolecules (2020-12-01)
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  5. 5

    Non-negative matrix factorization for learning alignment-specific models of protein evolution. by Ben Murrell, Thomas Weighill, Jan Buys, Robert Ketteringham, Sasha Moola, Gerdus Benade, Lise du Buisson, Daniel Kaliski, Tristan Hands, Konrad Scheffler

    Published in PLoS ONE (2011-01-01)
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  6. 6

    Frequent use of IGHV3-30-3 in SARS-CoV-2 neutralizing antibody responses by Pradeepa Pushparaj, Andrea Nicoletto, Xaquin Castro Dopico, Daniel J. Sheward, Sungyong Kim, Simon Ekström, Ben Murrell, Martin Corcoran, Gunilla B. Karlsson Hedestam

    Published in Frontiers in Virology (2023-03-01)
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  7. 7

    Phenotypic characterization of single CD4+ T cells harboring genetically intact and inducible HIV genomes by Caroline Dufour, Corentin Richard, Marion Pardons, Marta Massanella, Antoine Ackaoui, Ben Murrell, Bertrand Routy, Réjean Thomas, Jean-Pierre Routy, Rémi Fromentin, Nicolas Chomont

    Published in Nature Communications (2023-02-01)
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  8. 8

    IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform. by N Lance Hepler, Konrad Scheffler, Steven Weaver, Ben Murrell, Douglas D Richman, Dennis R Burton, Pascal Poignard, Davey M Smith, Sergei L Kosakovsky Pond

    Published in PLoS Computational Biology (2014-09-01)
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  9. 9

    Extra-epitopic hepatitis C virus polymorphisms confer resistance to broadly neutralizing antibodies by modulating binding to scavenger receptor B1. by Ramy El-Diwany, Valerie J Cohen, Madeleine C Mankowski, Lisa N Wasilewski, Jillian K Brady, Anna E Snider, William O Osburn, Ben Murrell, Stuart C Ray, Justin R Bailey

    Published in PLoS Pathogens (2017-02-01)
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  10. 10

    An alpaca nanobody neutralizes SARS-CoV-2 by blocking receptor interaction by Leo Hanke, Laura Vidakovics Perez, Daniel J. Sheward, Hrishikesh Das, Tim Schulte, Ainhoa Moliner-Morro, Martin Corcoran, Adnane Achour, Gunilla B. Karlsson Hedestam, B. Martin Hällberg, Ben Murrell, Gerald M. McInerney

    Published in Nature Communications (2020-09-01)
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  11. 11

    HIV Transmission Networks in the San Diego–Tijuana Border Region by Sanjay R. Mehta, Joel O. Wertheim, Kimberly C. Brouwer, Karla D. Wagner, Antoine Chaillon, Steffanie Strathdee, Thomas L. Patterson, Maria G. Rangel, Mlenka Vargas, Ben Murrell, Richard Garfein, Susan J. Little, Davey M. Smith

    Published in EBioMedicine (2015-10-01)
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  12. 12

    Longitudinal single-cell analysis of SARS-CoV-2–reactive B cells uncovers persistence of early-formed, antigen-specific clones by Lydia Scharf, Hannes Axelsson, Aikaterini Emmanouilidi, Nimitha R. Mathew, Daniel J. Sheward, Susannah Leach, Pauline Isakson, Ilya V. Smirnov, Emelie Marklund, Nicolae Miron, Lars-Magnus Andersson, Magnus Gisslén, Ben Murrell, Anna Lundgren, Mats Bemark, Davide Angeletti

    Published in JCI Insight (2023-01-01)
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  13. 13

    Multi-compartmental diversification of neutralizing antibody lineages dissected in SARS-CoV-2 spike-immunized macaques by Marco Mandolesi, Hrishikesh Das, Liset de Vries, Yiqiu Yang, Changil Kim, Manojj Dhinakaran, Xaquin Castro Dopico, Julian Fischbach, Sungyong Kim, Mariia V. Guryleva, Monika Àdori, Mark Chernyshev, Aron Stålmarck, Leo Hanke, Gerald M. McInerney, Daniel J. Sheward, Martin Corcoran, B. Martin Hällberg, Ben Murrell, Gunilla B. Karlsson Hedestam

    Published in Nature Communications (2024-07-01)
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  14. 14

    Three immunizations with Novavax’s protein vaccines increase antibody breadth and provide durable protection from SARS-CoV-2 by Klara Lenart, Rodrigo Arcoverde Cerveira, Fredrika Hellgren, Sebastian Ols, Daniel J. Sheward, Changil Kim, Alberto Cagigi, Matthew Gagne, Brandon Davis, Daritza Germosen, Vicky Roy, Galit Alter, Hélène Letscher, Jérôme Van Wassenhove, Wesley Gros, Anne-Sophie Gallouët, Roger Le Grand, Harry Kleanthous, Mimi Guebre-Xabier, Ben Murrell, Nita Patel, Gregory Glenn, Gale Smith, Karin Loré

    Published in npj Vaccines (2024-01-01)
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  15. 15

    Antigen receptor stimulation induces purifying selection against pathogenic mitochondrial tRNA mutations by Jingdian Zhang, Camilla Koolmeister, Jinming Han, Roberta Filograna, Leo Hanke, Monika Àdori, Daniel J. Sheward, Sina Teifel, Shreekara Gopalakrishna, Qiuya Shao, Yong Liu, Keying Zhu, Robert A. Harris, Gerald McInerney, Ben Murrell, Mike Aoun, Liselotte Bäckdahl, Rikard Holmdahl, Marcin Pekalski, Anna Wedell, Martin Engvall, Anna Wredenberg, Gunilla B. Karlsson Hedestam, Xaquin Castro Dopico, Joanna Rorbach

    Published in JCI Insight (2023-09-01)
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  16. 16

    Broadly Neutralizing Antibody Responses in a Large Longitudinal Sub-Saharan HIV Primary Infection Cohort. by Elise Landais, Xiayu Huang, Colin Havenar-Daughton, Ben Murrell, Matt A Price, Lalinda Wickramasinghe, Alejandra Ramos, Charoan B Bian, Melissa Simek, Susan Allen, Etienne Karita, William Kilembe, Shabir Lakhi, Mubiana Inambao, Anatoli Kamali, Eduard J Sanders, Omu Anzala, Vinodh Edward, Linda-Gail Bekker, Jianming Tang, Jill Gilmour, Sergei L Kosakovsky-Pond, Pham Phung, Terri Wrin, Shane Crotty, Adam Godzik, Pascal Poignard

    Published in PLoS Pathogens (2016-01-01)
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  17. 17

    Antigen pressure from two founder viruses induces multiple insertions at a single antibody position to generate broadly neutralizing HIV antibodies. by Collin Joyce, Sasha Murrell, Ben Murrell, Oluwarotimi Omorodion, Lorena S Ver, Nancy Carrico, Raiza Bastidas, Rebecca Nedellec, Michael Bick, Jordan Woehl, Fangzhu Zhao, Alison Burns, Shawn Barman, Michael Appel, Alejandra Ramos, Lalinda Wickramasinghe, Kemal Eren, Thomas Vollbrecht, Davey M Smith, Sergei L Kosakovsky Pond, Ryan McBride, Charli Worth, Facundo Batista, Devin Sok, IAVI Protocol C Investigators & The IAVI African HIV Research Network, Pascal Poignard, Bryan Briney, Ian A Wilson, Elise Landais, Dennis R Burton

    Published in PLoS Pathogens (2023-06-01)
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  18. 18

    Systematic evaluation of SARS‐CoV‐2 antigens enables a highly specific and sensitive multiplex serological COVID‐19 assay by Sophia Hober, Cecilia Hellström, Jennie Olofsson, Eni Andersson, Sofia Bergström, August Jernbom Falk, Shaghayegh Bayati, Sara Mravinacova, Ronald Sjöberg, Jamil Yousef, Lovisa Skoglund, Sara Kanje, Anna Berling, Anne‐Sophie Svensson, Gabriella Jensen, Henric Enstedt, Delaram Afshari, Lan Lan Xu, Martin Zwahlen, Kalle vonFeilitzen, Leo Hanke, Ben Murrell, Gerald McInerney, Gunilla B Karlsson Hedestam, Christofer Lendel, Robert G Roth, Ingmar Skoog, Elisabet Svenungsson, Tomas Olsson, Anna Fogdell‐Hahn, Ylva Lindroth, Maria Lundgren, Kimia T Maleki, Nina Lagerqvist, Jonas Klingström, Rui Da Silva Rodrigues, Sandra Muschiol, Gordana Bogdanovic, Laila Sara Arroyo Mühr, Carina Eklund, Camilla Lagheden, Joakim Dillner, Åsa Sivertsson, Sebastian Havervall, Charlotte Thålin, Hanna Tegel, Elisa Pin, Anna Månberg, My Hedhammar, Peter Nilsson

    Published in Clinical & Translational Immunology (2021-01-01)
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  19. 19

    Emergence and antibody evasion of BQ, BA.2.75 and SARS-CoV-2 recombinant sub-lineages in the face of maturing antibody breadth at the population levelResearch in context by Anouschka Akerman, Vanessa Milogiannakis, Tyra Jean, Camille Esneau, Mariana Ruiz Silva, Timothy Ison, Christina Fichter, Joseph A. Lopez, Deborah Chandra, Zin Naing, Joanna Caguicla, Daiyang Li, Gregory Walker, Supavadee Amatayakul-Chantler, Nathan Roth, Sandro Manni, Thomas Hauser, Thomas Barnes, Anna Condylios, Malinna Yeang, Maureen Wong, Charles S.P. Foster, Kenta Sato, Sharon Lee, Yang Song, Lijun Mao, Allison Sigmund, Amy Phu, Ann Marie Vande More, Stephanie Hunt, Mark Douglas, Ian Caterson, Warwick Britton, Kerrie Sandgren, Rowena Bull, Andrew Lloyd, Jamie Triccas, Stuart Tangye, Nathan W. Bartlett, David Darley, Gail Matthews, Damien J. Stark, Kathy Petoumenos, William D. Rawlinson, Ben Murrell, Fabienne Brilot, Anthony L. Cunningham, Anthony D. Kelleher, Anupriya Aggarwal, Stuart G. Turville

    Published in EBioMedicine (2023-04-01)
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