Search Results - Bram Vrancken

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  1. 1

    Tracing more than two decades of Japanese encephalitis virus circulation in mainland China by Gairu Li, Xinxin Li, Jie Chen, Phillipe Lemey, Bram Vrancken, Shuo Su, Simon Dellicour, Fabiana Gámbaro

    Published in Journal of Virology (2025-03-01)
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  2. 2

    Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing by Bram Vrancken, Nídia Sequeira Trovão, Guy Baele, Eric van Wijngaerden, Anne-Mieke Vandamme, Kristel van Laethem, Philippe Lemey

    Published in Viruses (2016-01-01)
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  3. 3

    Mapping Transmission Dynamics and Drug Resistance Surveillance in the Cyprus HIV-1 Epidemic (2017–2021) by Cicek Topcu, Bram Vrancken, Johana Hezka Rodosthenous, David van de Vijver, Georgios Siakallis, Philippe Lemey, Leondios G. Kostrikis

    Published in Viruses (2024-09-01)
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  4. 4

    Phylogenomic Characterization of Lopma Virus and Praja Virus, Two Novel Rodent-Borne Arteriviruses by Bert Vanmechelen, Zafeiro Zisi, Sophie Gryseels, Joëlle Goüy de Bellocq, Bram Vrancken, Philippe Lemey, Piet Maes, Magda Bletsa

    Published in Viruses (2021-09-01)
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  5. 5

    Limited evolution of the yellow fever virus 17d in a mouse infection model by Dieudonné Buh Kum, Niraj Mishra, Bram Vrancken, Hendrik Jan Thibaut, Annelies Wilder-Smith, Philippe Lemey, Johan Neyts, Kai Dallmeier

    Published in Emerging Microbes and Infections (2019-01-01)
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  6. 6

    Molecular Epidemiology of HIV-1 Subtype B Infection across Florida Reveals Few Large Superclusters with Metropolitan Origin by Shannan N. Rich, Mattia C. F. Prosperi, Simon Dellicour, Bram Vrancken, Robert L. Cook, Emma C. Spencer, Marco Salemi, Carla Mavian

    Published in Microbiology Spectrum (2022-12-01)
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  7. 7

    Dispersal history and bidirectional human-fish host switching of invasive, hypervirulent Streptococcus agalactiae sequence type 283. by Daniel Schar, Zhenyu Zhang, Joao Pires, Bram Vrancken, Marc A Suchard, Philippe Lemey, Margaret Ip, Marius Gilbert, Thomas Van Boeckel, Simon Dellicour

    Published in PLOS Global Public Health (2023-01-01)
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  8. 8

    The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates. by Bram Vrancken, Andrew Rambaut, Marc A Suchard, Alexei Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey

    Published in PLoS Computational Biology (2014-04-01)
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  9. 9

    Evaluation of metatranscriptomic sequencing protocols to obtain full-length RNA virus genomes from mammalian tissues. by Yiqiao Li, Mariana Polychronopoulou, Ine Boonen, Antonios Fikatas, Sophie Gryseels, Anne Laudisoit, Joelle Gouy de Bellocq, Bram Vrancken, Gkikas Magiorkinis, Philippe Lemey, Magda Bletsa

    Published in PLoS ONE (2025-01-01)
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  10. 10

    Evaluation of metatranscriptomic sequencing protocols to obtain full-length RNA virus genomes from mammalian tissues by Yiqiao Li, Mariana Polychronopoulou, Ine Boonen, Antonios Fikatas, Sophie Gryseels, Anne Laudisoit, Joelle Gouy de Bellocq, Bram Vrancken, Gkikas Magiorkinis, Philippe Lemey, Magda Bletsa

    Published in PLoS ONE (2025-01-01)
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  11. 11

    New evidence for the east–west spread of the highly pathogenic avian influenza H5N1 virus between Central Asian and east Asian-Australasian flyways in China by Weiyue Meng, Qiqi Yang, Bram Vrancken, Zhuo Chen, Dongping Liu, Lixia Chen, Xiang Zhao, Sarah François, Tian Ma, Ruyi Gao, Wendong Ru, Yunfeng Li, Hongxuan He, Guogang Zhang, Huaiyu Tian, Jun Lu

    Published in Emerging Microbes and Infections (2019-01-01)
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  12. 12

    Discovery and genome characterization of three new Jeilongviruses, a lineage of paramyxoviruses characterized by their unique membrane proteins by Bert Vanmechelen, Magda Bletsa, Lies Laenen, Ana Rita Lopes, Valentijn Vergote, Leen Beller, Ward Deboutte, Miša Korva, Tatjana Avšič Županc, Joëlle Goüy de Bellocq, Sophie Gryseels, Herwig Leirs, Philippe Lemey, Bram Vrancken, Piet Maes

    Published in BMC Genomics (2018-08-01)
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  13. 13

    An ancient influenza genome from Switzerland allows deeper insights into host adaptation during the 1918 flu pandemic in Europe by Christian Urban, Bram Vrancken, Livia V. Patrono, Ariane Düx, Mathilde Le Vu, Katarina L. Matthes, Nina Maria Burkhard-Koren, Navena Widulin, Thomas Schnalke, Sabina Carraro, Frank Rühli, Philippe Lemey, Kaspar Staub, Sébastien Calvignac-Spencer, Verena J. Schuenemann

    Published in BMC Biology (2025-07-01)
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  14. 14

    A Comprehensive Molecular Epidemiological Analysis of SARS-CoV-2 Infection in Cyprus from April 2020 to January 2021: Evidence of a Highly Polyphyletic and Evolving Epidemic by Andreas C. Chrysostomou, Bram Vrancken, George Koumbaris, George Themistokleous, Antonia Aristokleous, Christina Masia, Christina Eleftheriou, Costakis Iοannou, Dora C. Stylianou, Marios Ioannides, Panagiotis Petrou, Vasilis Georgiou, Amalia Hatziyianni, Philippe Lemey, Anne-Mieke Vandamme, Philippos P. Patsalis, Leondios G. Kostrikis

    Published in Viruses (2021-06-01)
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  15. 15

    Unraveling the Dynamics of Omicron (BA.1, BA.2, and BA.5) Waves and Emergence of the Deltacron Variant: Genomic Epidemiology of the SARS-CoV-2 Epidemic in Cyprus (Oct 2021–Oct 2022... by Andreas C. Chrysostomou, Bram Vrancken, Christos Haralambous, Maria Alexandrou, Ioanna Gregoriou, Marios Ioannides, Costakis Ioannou, Olga Kalakouta, Christos Karagiannis, Markella Marcou, Christina Masia, Michail Mendris, Panagiotis Papastergiou, Philippos C. Patsalis, Despo Pieridou, Christos Shammas, Dora C. Stylianou, Barbara Zinieri, Philippe Lemey, The COMESSAR Network, Leondios G. Kostrikis

    Published in Viruses (2023-09-01)
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  16. 16

    Analyses of Early ZIKV Genomes Are Consistent with Viral Spread from Northeast Brazil to the Americas by Laise de Moraes, Moyra M. Portilho, Bram Vrancken, Frederik Van den Broeck, Luciane Amorim Santos, Marina Cucco, Laura B. Tauro, Mariana Kikuti, Monaise M. O. Silva, Gúbio S. Campos, Mitermayer G. Reis, Aldina Barral, Manoel Barral-Netto, Viviane Sampaio Boaventura, Anne-Mieke Vandamme, Kristof Theys, Philippe Lemey, Guilherme S. Ribeiro, Ricardo Khouri

    Published in Viruses (2023-05-01)
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  17. 17

    A paucigranulocytic asthma host environment promotes the emergence of virulent influenza viral variants by Katina D Hulme, Anjana C Karawita, Cassandra Pegg, Myrna JM Bunte, Helle Bielefeldt-Ohmann, Conor J Bloxham, Silvie Van den Hoecke, Yin Xiang Setoh, Bram Vrancken, Monique Spronken, Lauren E Steele, Nathalie AJ Verzele, Kyle R Upton, Alexander A Khromykh, Keng Yih Chew, Maria Sukkar, Simon Phipps, Kirsty R Short

    Published in eLife (2021-02-01)
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  18. 18

    Genomic Epidemiology of the SARS-CoV-2 Epidemic in Cyprus from November 2020 to October 2021: The Passage of Waves of Alpha and Delta Variants of Concern by Andreas C. Chrysostomou, Bram Vrancken, Christos Haralambous, Maria Alexandrou, Antonia Aristokleous, Christina Christodoulou, Ioanna Gregoriou, Marios Ioannides, Olga Kalakouta, Christos Karagiannis, George Koumbaris, Charalambos Loizides, Michail Mendris, Panagiotis Papastergiou, Philippos C. Patsalis, Despo Pieridou, Jan Richter, Markus Schmitt, Christos Shammas, Dora C. Stylianou, Giorgos Themistokleous, the COMESSAR Network, Philippe Lemey, Leondios G. Kostrikis

    Published in Viruses (2022-12-01)
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  19. 19

    Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions by Shannan N Rich, Veronica Richards, Carla Mavian, Brittany Rife Magalis, Nathan Grubaugh, Sonja A Rasmussen, Simon Dellicour, Bram Vrancken, Christine Carrington, Rebecca Fisk-Hoffman, Demi Danso-Odei, Daniel Chacreton, Jerne Shapiro, Marie Nancy Seraphin, Crystal Hepp, Allison Black, Ann Dennis, Nídia Sequeira Trovão, Anne-Mieke Vandamme, Angela Rasmussen, Michael Lauzardo, Natalie Dean, Marco Salemi, Mattia Prosperi

    Published in JMIR Formative Research (2023-04-01)
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  20. 20

    Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades by Raphaëlle Klitting, Liana E. Kafetzopoulou, Wim Thiery, Gytis Dudas, Sophie Gryseels, Anjali Kotamarthi, Bram Vrancken, Karthik Gangavarapu, Mambu Momoh, John Demby Sandi, Augustine Goba, Foday Alhasan, Donald S. Grant, Sylvanus Okogbenin, Ephraim Ogbaini-Emovo, Robert F. Garry, Allison R. Smither, Mark Zeller, Matthias G. Pauthner, Michelle McGraw, Laura D. Hughes, Sophie Duraffour, Stephan Günther, Marc A. Suchard, Philippe Lemey, Kristian G. Andersen, Simon Dellicour

    Published in Nature Communications (2022-09-01)
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