Search Results - Caroline Colijn

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  1. 1

    The role of vaccine status homophily in the COVID-19 pandemic: a cross-sectional survey with modelling by Elisha B. Are, Kiffer G. Card, Caroline Colijn

    Published in BMC Public Health (2024-02-01)
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  2. 2

    Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling. by Nicola Mulberry, Alexander R Rutherford, Caroline Colijn

    Published in PLoS Computational Biology (2023-12-01)
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  3. 3

    Measuring genetic diversity across populations. by Niloufar Abhari, Caroline Colijn, Arne Mooers, Paul Tupper

    Published in PLoS Computational Biology (2024-12-01)
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  4. 4

    Phylogenies from dynamic networks. by Cornelia Metzig, Oliver Ratmann, Daniela Bezemer, Caroline Colijn

    Published in PLoS Computational Biology (2019-02-01)
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  5. 5

    Spontaneous emergence of multiple drug resistance in tuberculosis before and during therapy. by Caroline Colijn, Ted Cohen, Ayalvadi Ganesh, Megan Murray

    Published in PLoS ONE (2011-03-01)
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  6. 6

    The impact of sampling bias on viral phylogeographic reconstruction. by Pengyu Liu, Yexuan Song, Caroline Colijn, Ailene MacPherson

    Published in PLOS Global Public Health (2022-01-01)
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  7. 7

    Measles in Canada: modelling outbreaks with variable vaccine coverage and interventions by Jennifer McNichol, Javad Valizadeh, Samara Chaudhury, Caroline Colijn

    Published in BMC Infectious Diseases (2025-02-01)
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  8. 8

    The impact of sampling bias on viral phylogeographic reconstruction by Pengyu Liu, Yexuan Song, Caroline Colijn, Ailene MacPherson

    Published in PLOS Global Public Health (2022-01-01)
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  9. 9

    A method to estimate the serial interval distribution under partially-sampled data by Kurnia Susvitasari, Paul Tupper, Jessica E. Stockdale, Caroline Colijn

    Published in Epidemics (2023-12-01)
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  10. 10

    How the dynamics and structure of sexual contact networks shape pathogen phylogenies. by Katy Robinson, Nick Fyson, Ted Cohen, Christophe Fraser, Caroline Colijn

    Published in PLoS Computational Biology (2013-01-01)
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  11. 11

    Using artificial intelligence tools to automate data extraction for living evidence syntheses. by Evan Mitchell, Elisha B Are, Caroline Colijn, David J D Earn

    Published in PLoS ONE (2025-01-01)
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  12. 12

    Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks. by Don Klinkenberg, Jantien A Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga

    Published in PLoS Computational Biology (2017-05-01)
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  13. 13

    Vaccine rollout strategies: The case for vaccinating essential workers early by Nicola Mulberry, Paul Tupper, Erin Kirwin, Christopher McCabe, Caroline Colijn

    Published in PLOS Global Public Health (2021-01-01)
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  14. 14

    Vaccine rollout strategies: The case for vaccinating essential workers early. by Nicola Mulberry, Paul Tupper, Erin Kirwin, Christopher McCabe, Caroline Colijn

    Published in PLOS Global Public Health (2021-01-01)
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  15. 15

    Early prediction of Mycobacterium tuberculosis transmission clusters using supervised learning models by Omid Gheysar Gharamaleki, Caroline Colijn, Inna Sekirov, James C. Johnston, Benjamin Sobkowiak

    Published in Scientific Reports (2024-11-01)
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  16. 16

    Are survey-based estimates of the burden of drug resistant TB too low? Insight from a simulation study. by Ted Cohen, Caroline Colijn, Bryson Finklea, Abigail Wright, Matteo Zignol, Alexander Pym, Megan Murray

    Published in PLoS ONE (2008-06-01)
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  17. 17

    Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study [version 2; referees: 2 approved, 1 approved with reservations] by John A. Lees, Michelle Kendall, Julian Parkhill, Caroline Colijn, Stephen D. Bentley, Simon R. Harris

    Published in Wellcome Open Research (2018-05-01)
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  18. 18

    Correction: Inferring Carbon Sources from Gene Expression Profiles Using Metabolic Flux Models. by Aaron Brandes, Desmond S. Lun, Kuhn Ip, Jeremy Zucker, Caroline Colijn, Brian Weiner, James E. Galagan

    Published in PLoS ONE (2012-01-01)
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  19. 19

    A new method for detecting mixed Mycobacterium tuberculosis infection and reconstructing constituent strains provides insights into transmission by Benjamin Sobkowiak, Patrick Cudahy, Melanie H. Chitwood, Taane G. Clark, Caroline Colijn, Louis Grandjean, Katharine S. Walter, Valeriu Crudu, Ted Cohen

    Published in Genome Medicine (2025-01-01)
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  20. 20

    The cost-effectiveness of alternative vaccination strategies for polyvalent meningococcal vaccines in Burkina Faso: A transmission dynamic modeling study. by Reza Yaesoubi, Caroline Trotter, Caroline Colijn, Maziar Yaesoubi, Anaïs Colombini, Stephen Resch, Paul A Kristiansen, F Marc LaForce, Ted Cohen

    Published in PLoS Medicine (2018-01-01)
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