Search Results - Chongle Pan

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  1. 1

    Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities by Brandon Kieft, Zhou Li, Zhou Li, Samuel Bryson, Byron C. Crump, Robert Hettich, Robert Hettich, Chongle Pan, Chongle Pan, Xavier Mayali, Ryan S. Mueller

    Published in Frontiers in Microbiology (2018-06-01)
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  2. 2

    Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins by Yi Xiong, Ryan S. Mueller, Shichao Feng, Xuan Guo, Chongle Pan

    Published in Microbiome (2024-08-01)
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  3. 3

    Unified modeling language code generation from diagram images using multimodal large language models by Averi Bates, Ryan Vavricka, Shane Carleton, Ruosi Shao, Chongle Pan

    Published in Machine Learning with Applications (2025-06-01)
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  4. 4

    Absence of biofilm adhesin proteins changes surface attachment and cell strategy for Desulfovibrio vulgaris Hildenborough by C. Pete Pickens, Dongyu Wang, Chongle Pan, Kara B. De León

    Published in Journal of Bacteriology (2025-01-01)
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  5. 5

    MetaLP: An integrative linear programming method for protein inference in metaproteomics. by Shichao Feng, Hong-Long Ji, Huan Wang, Bailu Zhang, Ryan Sterzenbach, Chongle Pan, Xuan Guo

    Published in PLoS Computational Biology (2022-10-01)
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  6. 6

    Enhancing peptide identification in metaproteomics through curriculum learning in deep learning by Shichao Feng, Bailu Zhang, Huan Wang, Yi Xiong, Athena Tian, Xiaohui Yuan, Chongle Pan, Xuan Guo

    Published in Nature Communications (2025-10-01)
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  7. 7

    Phenotype fingerprinting suggests the involvement of single-genotype consortia in degradation of aromatic compounds by Rhodopseudomonas palustris. by Tatiana V Karpinets, Dale A Pelletier, Chongle Pan, Edward C Uberbacher, Galina V Melnichenko, Robert L Hettich, Nagiza F Samatova

    Published in PLoS ONE (2009-01-01)
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  8. 8

    Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis. by Babu Raman, Chongle Pan, Gregory B Hurst, Miguel Rodriguez, Catherine K McKeown, Patricia K Lankford, Nagiza F Samatova, Jonathan R Mielenz

    Published in PLoS ONE (2009-01-01)
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  9. 9

    Cross-Feedings, Competition, and Positive and Negative Synergies in a Four-Species Synthetic Community for Anaerobic Degradation of Cellulose to Methane by Dongyu Wang, Kristopher A. Hunt, Pieter Candry, Xuanyu Tao, Neil Q. Wofford, Jizhong Zhou, Michael J. McInerney, David A. Stahl, Ralph S. Tanner, Aifen Zhou, Mari Winkler, Chongle Pan

    Published in mBio (2023-04-01)
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  10. 10

    Automatic renal carcinoma biopsy guidance using forward-viewing endoscopic optical coherence tomography and deep learning by Chen Wang, Haoyang Cui, Qinghao Zhang, Paul Calle, Yuyang Yan, Feng Yan, Kar-Ming Fung, Sanjay G. Patel, Zhongxin Yu, Sean Duguay, William Vanlandingham, Ajay Jain, Chongle Pan, Qinggong Tang

    Published in Communications Engineering (2024-08-01)
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  11. 11

    Octascope: A Lightweight Pre-Trained Model for Optical Coherence Tomography by Haoyang Cui, Chen Wang, Paul Calle, Yunlong Liu, Qinghao Zhang, Sinaro Ly, Justin Reynolds, Feng Yan, Ke Zhang, Ronghao Liu, Junyuan Liu, Kar-Ming Fung, Zhongxin Yu, Ajay Jain, Qinggong Tang, Chongle Pan

    Published in IEEE Access (2025-01-01)
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  12. 12

    Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone by Cristina N. Butterfield, Zhou Li, Peter F. Andeer, Susan Spaulding, Brian C. Thomas, Andrea Singh, Robert L. Hettich, Kenwyn B. Suttle, Alexander J. Probst, Susannah G. Tringe, Trent Northen, Chongle Pan, Jillian F. Banfield

    Published in PeerJ (2016-11-01)
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  13. 13

    Metaproteomics-informed stoichiometric modeling reveals the responses of wetland microbial communities to oxygen and sulfate exposure by Dongyu Wang, Pieter Candry, Kristopher A. Hunt, Zachary Flinkstrom, Zheng Shi, Yunlong Liu, Neil Q. Wofford, Michael J. McInerney, Ralph S. Tanner, Kara B. De Leόn, Jizhong Zhou, Mari-Karoliina H. Winkler, David A. Stahl, Chongle Pan

    Published in npj Biofilms and Microbiomes (2024-07-01)
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  14. 14

    Modest functional diversity decline and pronounced composition shifts of microbial communities in a mixed waste-contaminated aquifer by Yupeng Fan, Dongyu Wang, Joy X. Yang, Daliang Ning, Zhili He, Ping Zhang, Andrea M. Rocha, Naijia Xiao, Jonathan P. Michael, Katie F. Walker, Dominique C. Joyner, Chongle Pan, Michael W. W. Adams, Matthew W. Fields, Eric J. Alm, David A. Stahl, Terry C. Hazen, Paul D. Adams, Adam P. Arkin, Jizhong Zhou

    Published in Microbiome (2025-04-01)
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