Search Results - Costas D. Maranas

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  1. 1

    CatPred: a comprehensive framework for deep learning in vitro enzyme kinetic parameters by Veda Sheersh Boorla, Costas D. Maranas

    Published in Nature Communications (2025-02-01)
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  2. 2

    novoStoic2.0: An integrated framework for pathway synthesis, thermodynamic evaluation, and enzyme selection. by Vikas Upadhyay, Mohit Anand, Costas D Maranas

    Published in PLoS Computational Biology (2025-08-01)
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  3. 3

    Computational biophysical characterization of the SARS-CoV-2 spike protein binding with the ACE2 receptor and implications for infectivity by Ratul Chowdhury, Veda Sheersh Boorla, Costas D. Maranas

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  4. 4

    k-OptForce: integrating kinetics with flux balance analysis for strain design. by Anupam Chowdhury, Ali R Zomorrodi, Costas D Maranas

    Published in PLoS Computational Biology (2014-02-01)
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  5. 5

    Genome‐scale gene/reaction essentiality and synthetic lethality analysis by Patrick F Suthers, Alireza Zomorrodi, Costas D Maranas

    Published in Molecular Systems Biology (2009-08-01)
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  6. 6

    Modeling Growth Kinetics, Interspecies Cell Fusion, and Metabolism of a <named-content content-type="genus-species">Clostridium acetobutylicum</named-content>/<named-content conten... by Charles Foster, Kamil Charubin, Eleftherios T. Papoutsakis, Costas D. Maranas

    Published in mSystems (2021-02-01)
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  7. 7

    A review of computational tools for design and reconstruction of metabolic pathways by Lin Wang, Satyakam Dash, Chiam Yu Ng, Costas D. Maranas

    Published in Synthetic and Systems Biotechnology (2017-12-01)
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  8. 8

    From Escherichia coli mutant 13C labeling data to a core kinetic model: A kinetic model parameterization pipeline. by Charles J Foster, Saratram Gopalakrishnan, Maciek R Antoniewicz, Costas D Maranas

    Published in PLoS Computational Biology (2019-09-01)
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  9. 9

    Impact of stoichiometry representation on simulation of genotype-phenotype relationships in metabolic networks. by Ana Rita Brochado, Sergej Andrejev, Costas D Maranas, Kiran R Patil

    Published in PLoS Computational Biology (2012-01-01)
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  10. 10

    EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning by Deepro Banerjee, Michael A. Jindra, Alec J. Linot, Brian F. Pfleger, Costas D. Maranas

    Published in Current Research in Biotechnology (2022-01-01)
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  11. 11

    Current State, Challenges, and Opportunities in Genome-Scale Resource Allocation Models: A Mathematical Perspective by Wheaton L. Schroeder, Patrick F. Suthers, Thomas C. Willis, Eric J. Mooney, Costas D. Maranas

    Published in Metabolites (2024-06-01)
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  12. 12

    Reconstruction and comparison of the metabolic potential of cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC 6803. by Rajib Saha, Alex T Verseput, Bertram M Berla, Thomas J Mueller, Himadri B Pakrasi, Costas D Maranas

    Published in PLoS ONE (2012-01-01)
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  13. 13

    Engineering of E. coli inherent fatty acid biosynthesis capacity to increase octanoic acid production by Zaigao Tan, Jong Moon Yoon, Anupam Chowdhury, Kaitlin Burdick, Laura R. Jarboe, Costas D. Maranas, Jacqueline V. Shanks

    Published in Biotechnology for Biofuels (2018-04-01)
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  14. 14

    A Genome-Scale Metabolic Model of <i>Anabaena</i> 33047 to Guide Genetic Modifications to Overproduce Nylon Monomers by John I. Hendry, Hoang V. Dinh, Debolina Sarkar, Lin Wang, Anindita Bandyopadhyay, Himadri B. Pakrasi, Costas D. Maranas

    Published in Metabolites (2021-03-01)
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  15. 15

    Synthetic Biology of Cyanobacteria: Unique Challenges and Opportunities by Bertram M Berla, Rajib eSaha, Cheryl M Immethun, Costas D Maranas, Tae Seok eMoon, Himadri ePakrasi

    Published in Frontiers in Microbiology (2013-08-01)
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  16. 16

    Genome streamlining to improve performance of a fast-growing cyanobacterium Synechococcus elongatus UTEX 2973 by Annesha Sengupta, Anindita Bandyopadhyay, Debolina Sarkar, John I. Hendry, Max G. Schubert, Deng Liu, George M. Church, Costas D. Maranas, Himadri B. Pakrasi

    Published in mBio (2024-03-01)
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  17. 17

    Metabolic engineering of low-pH-tolerant non-model yeast, Issatchenkia orientalis, for production of citramalate by Zong-Yen Wu, Wan Sun, Yihui Shen, Jimmy Pratas, Patrick F. Suthers, Ping-Hung Hsieh, Sudharsan Dwaraknath, Joshua D. Rabinowitz, Costas D. Maranas, Zengyi Shao, Yasuo Yoshikuni

    Published in Metabolic Engineering Communications (2023-06-01)
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  18. 18

    Little Brown Bats (<i>Myotis lucifugus</i>) Support the Binding of SARS-CoV-2 Spike and Are Likely Susceptible to SARS-CoV-2 Infection by Shubhada K. Chothe, Padmaja Jakka, Veda Sheersh Boorla, Santhamani Ramasamy, Abhinay Gontu, Ruth H. Nissly, Justin Brown, Gregory Turner, Brent J. Sewall, DeeAnn M. Reeder, Kenneth A. Field, Julie B. Engiles, Saranya Amirthalingam, Abirami Ravichandran, Lindsey LaBella, Meera Surendran Nair, Costas D. Maranas, Suresh V. Kuchipudi

    Published in Viruses (2023-04-01)
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  19. 19

    Development and Validation of Indirect Enzyme-Linked Immunosorbent Assays for Detecting Antibodies to SARS-CoV-2 in Cattle, Swine, and Chicken by Abhinay Gontu, Erika A. Marlin, Santhamani Ramasamy, Sabarinath Neerukonda, Gayatri Anil, Jasmine Morgan, Meysoon Quraishi, Chen Chen, Veda Sheersh Boorla, Ruth H. Nissly, Padmaja Jakka, Shubhada K. Chothe, Abirami Ravichandran, Nishitha Kodali, Saranya Amirthalingam, Lindsey LaBella, Kathleen Kelly, Pazhanivel Natesan, Allen M. Minns, Randall M. Rossi, Jacob R. Werner, Ernest Hovingh, Scott E. Lindner, Deepanker Tewari, Vivek Kapur, Kurt J. Vandegrift, Costas D. Maranas, Meera Surendran Nair, Suresh V. Kuchipudi

    Published in Viruses (2022-06-01)
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  20. 20

    SARS-CoV-2 Omicron (B.1.1.529) Infection of Wild White-Tailed Deer in New York City by Kurt J. Vandegrift, Michele Yon, Meera Surendran Nair, Abhinay Gontu, Santhamani Ramasamy, Saranya Amirthalingam, Sabarinath Neerukonda, Ruth H. Nissly, Shubhada K. Chothe, Padmaja Jakka, Lindsey LaBella, Nicole Levine, Sophie Rodriguez, Chen Chen, Veda Sheersh Boorla, Tod Stuber, Jason R. Boulanger, Nathan Kotschwar, Sarah Grimké Aucoin, Richard Simon, Katrina L. Toal, Randall J. Olsen, James J. Davis, Dashzeveg Bold, Natasha N. Gaudreault, Krishani Dinali Perera, Yunjeong Kim, Kyeong-Ok Chang, Costas D. Maranas, Juergen A. Richt, James M. Musser, Peter J. Hudson, Vivek Kapur, Suresh V. Kuchipudi

    Published in Viruses (2022-12-01)
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