Search Results - David Alland

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  1. 1

    Optimal processing of tongue swab samples for Mycobacterium tuberculosis detection by the Xpert MTB/RIF Ultra assay by Gayatri Shankar Chilambi, Robert Reiss, Naranjargal Daivaa, Padmapriya Banada, Margaretha De Vos, Adam Penn-Nicholson, David Alland

    Published in Microbiology Spectrum (2025-03-01)
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  2. 2

    Inactivation of SARS-CoV-2 virus in saliva using a guanidium based transport medium suitable for RT-PCR diagnostic assays. by Sukalyani Banik, Kaheerman Saibire, Shraddha Suryavanshi, Glenn Johns, Soumitesh Chakravorty, Robert Kwiatkowski, David Alland, Padmapriya P Banada

    Published in PLoS ONE (2021-01-01)
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  3. 3

    Origin and Dynamics of Mycobacterium tuberculosis Subpopulations That Predictably Generate Drug Tolerance and Resistance by Jees Sebastian, Anooja Thomas, Carly Levine, Riju Shrestha, Shawn Levy, Hassan Safi, Sri Ram Pentakota, Pradeep Kumar, David Alland

    Published in mBio (2022-12-01)
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  4. 4

    Clinical utility of a novel molecular assay in various combination strategies with existing methods for diagnosis of HIV-related tuberculosis in Uganda. by Willy Ssengooba, Lydia Nakiyingi, Derek T Armstrong, Frank G Cobelens, David Alland, Yukari C Manabe, Susan E Dorman, Jerrold J Ellner, Moses L Joloba

    Published in PLoS ONE (2014-01-01)
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  5. 5

    An expanded RT-PCR melting temperature coding assay to rapidly identify all known SARS-CoV-2 variants and sub-variants of concern by Padmapriya P. Banada, Raquel Green, Deanna Streck, Rohini Kurvathi, Robert Reiss, Sukalyani Banik, Naranjargal Daivaa, Ibsen Montalvan, Robert Jones, Salvatore A. E. Marras, Soumitesh Chakravorty, David Alland

    Published in Scientific Reports (2023-12-01)
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  6. 6

    Discordance of tuberculin skin test and interferon gamma release assay in recently exposed household contacts of pulmonary TB cases in Brazil. by Rodrigo Ribeiro-Rodrigues, Soyeon Kim, Flávia Dias Coelho da Silva, Aleksandra Uzelac, Lauren Collins, Moíses Palaci, David Alland, Reynaldo Dietze, Jerrold J Ellner, Edward Jones-López, Padmini Salgame

    Published in PLoS ONE (2014-01-01)
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  7. 7

    A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome by Poonam Chitale, Alexander D. Lemenze, Emily C. Fogarty, Avi Shah, Courtney Grady, Aubrey R. Odom-Mabey, W. Evan Johnson, Jason H. Yang, A. Murat Eren, Roland Brosch, Pradeep Kumar, David Alland

    Published in Nature Communications (2022-11-01)
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  8. 8

    Bacterial Loads Measured by the Xpert MTB/RIF Assay as Markers of Culture Conversion and Bacteriological Cure in Pulmonary TB. by Shubhada Shenai, Katharina Ronacher, Stefanus Malherbe, Kim Stanley, Magdalena Kriel, Jill Winter, Thomas Peppard, Charles E Barry, Jing Wang, Lori E Dodd, Laura E Via, Clifton E Barry, Gerhard Walzl, David Alland

    Published in PLoS ONE (2016-01-01)
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  9. 9

    Transcriptional regulation of multi-drug tolerance and antibiotic-induced responses by the histone-like protein Lsr2 in M. tuberculosis. by Roberto Colangeli, Danica Helb, Catherine Vilchèze, Manzour Hernando Hazbón, Chee-Gun Lee, Hassan Safi, Brendan Sayers, Irene Sardone, Marcus B Jones, Robert D Fleischmann, Scott N Peterson, William R Jacobs, David Alland

    Published in PLoS Pathogens (2007-06-01)
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  10. 10

    Persistence of SARS-CoV-2 in saliva: Implications for late-stage diagnosis and infectious duration. by Abby Chopoorian, Padmapriya Banada, Robert Reiss, David Elson, Samuel Desind, Claire Park, Sukalyani Banik, Emily Hennig, Aanchal Wats, Austin Togba, Abraham Wei, Naranjargal Daivaa, Laura Palo, Mitchell Hirsch, Carter Campbell, Pooja Saiganesh, David Alland, Yingda L Xie

    Published in PLoS ONE (2023-01-01)
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  11. 11

    Identification of an antibiotic from an HTS targeting EF-Tu:tRNA interaction: a prospective topical treatment for MRSA skin infections by Wlodek Mandecki, Maxim Chudaev, Wenjuan Ye, Amy Q. Wang, Kenneth J. Wilson, Xin Xu, Jisun Kim, Dane Parker, David Alland, Pradeep Kumar, Barry Li, Jason H. Yang, Barry Kreiswirth, Jose R. Mediavilla, Juan J. Marugan, Mark J. Henderson, Emanuel Goldman

    Published in Applied and Environmental Microbiology (2025-01-01)
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  12. 12

    Importance of cough and M. tuberculosis strain type as risks for increased transmission within households. by Edward C Jones-López, Soyeon Kim, Geisa Fregona, Patricia Marques-Rodrigues, David Jamil Hadad, Lucilia Pereira Dutra Molina, Solange Vinhas, Nancy Reilly, Stephanie Moine, Soumitesh Chakravorty, Mary Gaeddert, Rodrigo Ribeiro-Rodrigues, Padmini Salgame, Moises Palaci, David Alland, Jerrold J Ellner, Reynaldo Dietze

    Published in PLoS ONE (2014-01-01)
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  13. 13

    Novel and optimized diagnostics for pediatric TB in endemic countries: NOD-pedFEND study protocol by Rinn Song, Else Margreet Bijker, Grace Kisitu, Emily Douglass, Emmanuel Nasinghe, Francesca Wanda Basile, Nisreen Khambati, Adam Penn-Nicholson, Morten Ruhwald, Soyeon Kim, Nathan Mudrak, Nandini Dendukuri, César Ugarte-Gil, Padmini Salgame, David Alland, Susan E. Dorman, Jerrold Ellner, Moses Joloba, Adeodata Kekitiinwa, for the NOD-pedFEND consortium

    Published in BMC Pediatrics (2025-08-01)
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  14. 14

    Detection of drug resistant Mycobacterium tuberculosis by high-throughput sequencing of DNA isolated from acid fast bacilli smears. by Mazhgan Rowneki, Naomi Aronson, Peicheng Du, Paige Sachs, Robert Blakemore, Soumitesh Chakravorty, Shawn Levy, Angela L Jones, Geetika Trivedi, Sheilla Chebore, Dennis Addo, Denis K Byarugaba, Panganani Dalisani Njobvu, Frederick Wabwire-Mangen, Bernard Erima, Eric S Ramos, Carlton A Evans, Braden Hale, James D Mancuso, David Alland

    Published in PLoS ONE (2020-01-01)
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  15. 15

    Prominence of Mycobacterium tuberculosis biomarkers among sputum culture-negative clinic attendees, independent of Ultra status by Yingda L. Xie, Nisha Modi, Kattya Lopez, Robert Reiss, Jorge Robledo, Christie Eichberg, Nchimunya Hapeela, Elizabeth Nakabugo, Irene Anyango, Kiranjot Arora, Ronald Odero, Judi Van Heerden, Widaad Zemanay, Vaishnavi S. Kaipilyawar, Samuel Kennedy, Padmapriya Banada, Lydia Nakiyingi, Moses L. Joloba, Chad Centner, Kimberly McCarthy, Jerrold Ellner, Padmini Salgame, David Alland, Susan E. Dorman

    Published in Journal of Infection and Public Health (2025-07-01)
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